PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof004312

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

WOX

Protein Properties

Length: 215aa MW: 24005 Da PI: 7.7624

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17306529	PU_unref	Unigene	View CDS
PUT-157a-Saccharum_officinarum-83017	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.1	3.5e-19	93	153	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++t+ ql++Le+ F + n +ps+++++e++++l +++e++V++W qNrRa+ k+ Sof004312 93 RQRWQPTPMQLQILENIFDQgNGTPSKQKIKEITAELshhgQISETNVYNWVQNRRARSKR 153 89***************99************************************97 PP
2	Wus_type_Homeobox	97.4	1.2e-31	92	155	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 ar+RW Ptp Q++iLe+++++G tP+k++i++itaeL+++G+i+++NV++W QNr+aR+++kq Sof004312 92 ARQRWQPTPMQLQILENIFDQGNGTPSKQKIKEITAELSHHGQISETNVYNWVQNRRARSKRKQ 155 789***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.4E-15	88	158	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.669	89	154	IPR001356	Homeobox domain
SMART	SM00389	2.8E-12	91	158	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.11E-16	92	156	IPR009057	Homeodomain-like
CDD	cd00086	3.97E-12	93	155	No hit	No description
Pfam	PF00046	5.6E-17	93	153	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 215 aa Download sequence Send to blast
MEWGDRAKAS AAAVAADERA GGGEVLGGYV KVMTDEQMEV LRKQISIYAT ICEQLVDMHR 60 TLTEHQDTIA GMRFSNLYSD PLIIPGGHKI TARQRWQPTP MQLQILENIF DQGNGTPSKQ 120 KIKEITAELS HHGQISETNV YNWVQNRRAR SKRKQAVSLP NTSNAESQAE VEEESFHRQE 180 AQSPDRFTPK INKGYWVGSP VAGQGISKGN ALQLF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	146	154	RRARSKRKQ

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.22931	0.0	crown\| inflorescence

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002456540.1	1e-106	WUSCHEL-related homeobox 8
Swissprot	Q5QMM3	3e-85	WOX8_ORYSJ; WUSCHEL-related homeobox 8
TrEMBL	C5XN90	1e-105	C5XN90_SORBI; Uncharacterized protein
STRING	Sb03g038080.1	1e-105	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35550.1	5e-65	WUSCHEL related homeobox 13

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]