PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof004384

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

bZIP

Protein Properties

Length: 212aa MW: 22951.2 Da PI: 6.5055

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-52577	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	39.5	1.2e-12	105	151	5	51
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 ++ r++kNRe+A rsR+RK+a+++eLe++v L +eN +Lk + ++ Sof004384 105 RKNNRMMKNRESALRSRARKRAYVQELEKEVRRLVNENLKLKRQCKQ 151 5678**********************************888877665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51257	5	1	25	No hit	No description
SMART	SM00338	2.2E-8	100	178	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.726	103	148	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.52E-11	105	154	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.4E-13	105	153	No hit	No description
Pfam	PF00170	2.1E-10	105	153	IPR004827	Basic-leucine zipper domain
CDD	cd14707	6.56E-18	105	152	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MPRSPQLSLS GCSSLFSLSS TSTSCDNDDS AAALTAPVPA PPAGASLHPL PPRRLPLLSL 60 SIGGGEEEDE DEEEYLLGAG ALDLQLTGAG GSSNSSSGGG CDQERKNNRM MKNRESALRS 120 RARKRAYVQE LEKEVRRLVN ENLKLKRQCK QTESGYGCTD PAKQQQEQLP HQKNLLXHSA 180 LAQPSALDTP AWVLNQSMVG SFAWVHACPW WX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002453108.1	1e-47	bZIP transcription factor 27
TrEMBL	C5XWU0	3e-46	C5XWU0_SORBI; Uncharacterized protein
STRING	Sb04g038600.1	6e-47	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35900.1	8e-12	bZIP family protein