PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004387
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C2H2
Protein Properties Length: 212aa    MW: 22279.1 Da    PI: 9.3518
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17254145PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-70404PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.64.6e-0598120123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                ++C+ CgksFs+   L  H  +H
  Sof004387  98 FRCSVCGKSFSSYQALGGHKTSH 120
                89**********99998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.45E-697124No hitNo description
PfamPF139128.1E-1398121IPR007087Zinc finger, C2H2
SMARTSM003550.005498120IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.92698125IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.2E-498120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
PfamPF139124.6E-7175200IPR007087Zinc finger, C2H2
SMARTSM00355240176198IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    Send to blast
MELLHALIPE KQSEEEAVAL MAPVAATTTT TSSSATVMSG DEAAHVPQGW AKKKRSRRQR  60
SEEENLALCL LMLSRGGNHR VQAAPPLVPS VAPVAAEFRC SVCGKSFSSY QALGGHKTSH  120
RVKLPTPPAA AAVVPAAVPL VEVVIPPPPV EVVVREPATS STAASSDGAA ASSRVHRCSI  180
LHKEFPTGQP LGGHKKNHYE RSVRSNAAST DX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.186500.0crown| leaf| meristem| root
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: During germination, abundant up to fourteen hours after imbibition. Levels decrease slightly after this and then gradually increase again. {ECO:0000269|PubMed:8223628}.
UniprotTISSUE SPECIFICITY: Highest levels in the root apex of wheat seedlings, lowest levels in leaf proximal region. {ECO:0000269|PubMed:8223628}.
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463836.17e-84zinc finger protein 1
SwissprotQ424301e-61ZFP1_WHEAT; Zinc finger protein 1
TrEMBLC5X0312e-82C5X031_SORBI; Uncharacterized protein
STRINGSb01g007170.13e-83(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.17e-18C2H2 family protein