PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004435
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB
Protein Properties Length: 210aa    MW: 23512.2 Da    PI: 10.553
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17399757PU_refUnigeneView CDS
PUT-157a-Saccharum_officinarum-131717PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.92.3e-182673148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +grWT+eEde+l+++++++G g+W++ ++  g+ R++k+c++rw +yl
        Sof004435 26 KGRWTKEEDEILARYIEEHGEGSWRSLPKNAGLLRCGKSCRLRWINYL 73
                     79******************************99************97 PP
2Myb_DNA-binding56.85.2e-1879124148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T+eE+e ++++++ lG++ W++Ia +++ gRt++++k++w+++l
        Sof004435  79 RGNITEEEEEMIIKLHATLGNR-WSLIAGHLP-GRTDNEIKNYWNSHL 124
                      7999******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.2E-231776IPR009057Homeodomain-like
PROSITE profilePS5129417.6052173IPR017930Myb domain
SuperFamilySSF466892.91E-3023120IPR009057Homeodomain-like
SMARTSM007171.2E-132575IPR001005SANT/Myb domain
PfamPF002499.6E-172673IPR001005SANT/Myb domain
CDDcd001676.16E-112873No hitNo description
PROSITE profilePS5129425.76574128IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.3E-2677127IPR009057Homeodomain-like
SMARTSM007172.1E-1778126IPR001005SANT/Myb domain
PfamPF002494.2E-1679124IPR001005SANT/Myb domain
CDDcd001677.76E-889124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
LALLSRTEKP IRMGRAPCCE KVGLKKGRWT KEEDEILARY IEEHGEGSWR SLPKNAGLLR  60
CGKSCRLRWI NYLRADLKRG NITEEEEEMI IKLHATLGNR WSLIAGHLPG RTDNEIKNYW  120
NSHLSRRAAD FRDGVVVNVD LSKLPGGGKR RGGRAXRGIV AGAKSGATKE NNAKGKRXKD  180
DMGKNNVAAQ AGQQQQQLKG KEEEDNSKFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-252412825128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.163840.0inflorescence| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002455521.16e-92myb-related protein P
SwissprotP278986e-75MYBP_MAIZE; Myb-related protein P
TrEMBLA0A0C6WCP25e-99A0A0C6WCP2_9POAL; ScMYB5 protein
STRINGSb03g012550.12e-91(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47460.14e-73myb domain protein 12
Publications ? help Back to Top
  1. Robbins ML,Sekhon RS,Meeley R,Chopra S
    A Mutator transposon insertion is associated with ectopic expression of a tandemly repeated multicopy Myb gene pericarp color1 of maize.
    Genetics, 2008. 178(4): p. 1859-74
    [PMID:18430921]
  2. Sidorenko L,Chandler V
    RNA-dependent RNA polymerase is required for enhancer-mediated transcriptional silencing associated with paramutation at the maize p1 gene.
    Genetics, 2008. 180(4): p. 1983-93
    [PMID:18845841]
  3. Robbins ML,Wang P,Sekhon RS,Chopra S
    Gene structure induced epigenetic modifications of pericarp color1 alleles of maize result in tissue-specific mosaicism.
    PLoS ONE, 2009. 4(12): p. e8231
    [PMID:20011605]
  4. Rhee Y,Sekhon RS,Chopra S,Kaeppler S
    Tissue culture-induced novel epialleles of a Myb transcription factor encoded by pericarp color1 in maize.
    Genetics, 2010. 186(3): p. 843-55
    [PMID:20823340]
  5. Morohashi K, et al.
    A genome-wide regulatory framework identifies maize pericarp color1 controlled genes.
    Plant Cell, 2012. 24(7): p. 2745-64
    [PMID:22822204]