PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004468
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family FAR1
Protein Properties Length: 208aa    MW: 22992.2 Da    PI: 8.9947
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17448048PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-44110PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA46.45.6e-1577113135
       GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                C  Cg +   Tp++Rrgpdg++tLCnaCG+ yrk ++
  Sof004468  77 CLRCGISGnaTPHMRRGPDGPRTLCNACGIAYRKGKM 113
                6667777777************************876 PP
2FAR150.19.4e-16147205162
       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgC 62 
                +fYn+YA +vGFsvrks+s+ks++n  ++ rtfvCs+eg+++++k+   +++++r  tr+ C
  Sof004468 147 EFYNKYAGHVGFSVRKSTSHKSSENI-TKVRTFVCSREGYNRDKKSL--EAKKPRLDTRIRC 205
                6*********************6666.899*************9988..999*********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004014.2E-670126IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.33E-1173125No hitNo description
Gene3DG3DSA:3.30.50.105.9E-1276115IPR013088Zinc finger, NHR/GATA-type
PfamPF003208.7E-1377112IPR000679Zinc finger, GATA-type
CDDcd002025.30E-887114No hitNo description
PfamPF031011.1E-12147206IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    Send to blast
LPAPNPNPNP ERPKKFAKIA HNFAADYLPG GDAMMHMLVA PDGGGGELQP YGAPPAEQEL  60
ELLRDNADDG LEGHVRCLRC GISGNATPHM RRGPDGPRTL CNACGIAYRK GKMRRMIEAK  120
PPIDEASLAK LVPEVGMEFV SEEKAYEFYN KYAGHVGFSV RKSTSHKSSE NITKVRTFVC  180
SREGYNRDKK SLEAKKPRLD TRIRCPEN
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.160190.0inflorescence| leaf| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021309418.11e-120protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A1W0W7B61e-119A0A1W0W7B6_SORBI; Uncharacterized protein
TrEMBLA0A1W0W7F11e-119A0A1W0W7F1_SORBI; Uncharacterized protein
STRINGMLOC_70827.21e-116(Hordeum vulgare)
STRINGGRMZM2G114461_P011e-117(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.22e-13GATA-type zinc finger protein with TIFY domain