PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004513
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 206aa    MW: 21326.9 Da    PI: 10.6529
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17375215PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-29742PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.62.4e-213384156
        AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
               ++y+GVr ++ +gr++AeIrdp    k+ r++lg+f+taeeAa+a++aa+++++g+
  Sof004513 33 PHYRGVRKRP-WGRYAAEIRDPA---KKSRVWLGTFDTAEEAARAYDAAAREYRGA 84
               68********.**********83...36**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008479.6E-153383IPR001471AP2/ERF domain
CDDcd000186.99E-193391No hitNo description
Gene3DG3DSA:3.30.730.101.0E-323491IPR001471AP2/ERF domain
PROSITE profilePS5103224.2893491IPR001471AP2/ERF domain
SMARTSM003806.1E-363497IPR001471AP2/ERF domain
SuperFamilySSF541712.75E-233492IPR016177DNA-binding domain
PRINTSPR003671.2E-113546IPR001471AP2/ERF domain
PRINTSPR003671.2E-115773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MAPRTSEKTM TPAAAGATGL ALSVGGGAGA GGPHYRGVRK RPWGRYAAEI RDPAKKSRVW  60
LGTFDTAEEA ARAYDAAARE YRGAKAKTNF PFPSSCMTLA AGAGAGTGTL PAAAAVTGGG  120
SRSSNSSTVE SLSGGSDVQA APMQAMPLPP SLELDLFQRA VAAGTGAGGR RVRFLFNSYP  180
VTHPYYFFKK PQLPRNMVPH AQACTX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-233092164ATERF1
3gcc_A5e-233092164ATERF1
5wx9_A2e-222691472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.181410.0crown| leaf| meristem| seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441319.16e-82ethylene-responsive transcription factor 8
TrEMBLC5Z0C21e-80C5Z0C2_SORBI; Uncharacterized protein
STRINGSb09g024400.12e-81(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.12e-21erf domain protein 9