PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004553
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family YABBY
Protein Properties Length: 205aa    MW: 23002.4 Da    PI: 8.0455
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-725133728PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-725133729PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY584.3e-18146146
      YABBY  1 advfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsll 46
               +d++s+se++Cyv+C++Cnt+lav vP ++l+ + tv+CGhC +l 
  Sof004553  1 MDMVSQSEHLCYVRCTYCNTVLAVGVPCKTLMDTETVKCGHCNNLS 46
               57899**************************************984 PP
2YABBY85.61.4e-2687147102162
      YABBY 102 senedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWah 162
                s  ++e +pr+p v++PPek+ r P aynr+++eeiqrika+ Pdi hreaf++aaknWa 
  Sof004553  87 SPTSTELSPRMPFVVKPPEKKHRLPYAYNRLMREEIQRIKAAKPDIPHREAFTMAAKNWAK 147
                556778899**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.3E-416148IPR006780YABBY protein
SuperFamilySSF470951.4E-590149IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDMVSQSEHL CYVRCTYCNT VLAVGVPCKT LMDTETVKCG HCNNLSYLSP RPPMVQPLSP  60
TDHPLGPFQC QGPCNECGRN QPLPLASPTS TELSPRMPFV VKPPEKKHRL PYAYNRLMRE  120
EIQRIKAAKP DIPHREAFTM AAKNWAKCDP RCSTTTASAA TSNSAPEPRV VPTPQVTEAR  180
FDLEDRAKEQ VIESFDIFKQ IERSI
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.47550.0inflorescence| leaf| seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Detected during flower and leaf development. Expression in the flower meristem in the early stage of flower development. When carpel primordia begin to form, specific and uniform expression in carpel primordia. Expression in the central region of the leaf plastochron 1 (P1) primordia. Detected up to P4 stage, hardly detected in the P5 leaves. {ECO:0000269|PubMed:14729915}.
Functional Description ? help Back to Top
Source Description
UniProtRegulates carpel specification in flower development. Severe or intermediate mutation in DL causes complete or partial homeotic conversion of carpels into stamens without affecting the identities of other floral organs. Interacts antagonistically with class B genes and controls floral meristem determinacy. Regulates midrib formation in leaves probably by inducing cell proliferation in the central region of the leaf. {ECO:0000269|PubMed:14729915}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468276.11e-143protein DROOPING LEAF isoform X2
SwissprotQ76EJ01e-109YABDL_ORYSJ; Protein DROOPING LEAF
TrEMBLC5NS031e-141C5NS03_SORBI; DL related protein
STRINGSb01g042850.11e-142(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.12e-48YABBY family protein