PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof004565

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

HD-ZIP

Protein Properties

Length: 204aa MW: 21801.2 Da PI: 6.7952

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17414206	PU_unref	Unigene	View CDS
PUT-157a-Saccharum_officinarum-123111	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	37.7	3.5e-12	1	25	32	56
HHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 32 eLAkklgLterqVkvWFqNrRakek 56 +LA+ lgL+ rqV +WFqNrRa++k Sof004565 1 QLARALGLQPRQVAIWFQNRRARWK 25 79**********************9 PP
2	HD-ZIP_I/II	85.9	5.3e-28	1	63	31	93
HD-ZIP_I/II 31 elareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +lar+Lglqprqva+WFqnrRAR+ktkqlEkdy+aL+r++da ++en++L +++++L++e+++ Sof004565 1 QLARALGLQPRQVAIWFQNRRARWKTKQLEKDYDALRRQLDAARAENDALLAHNKKLQAEIMA 63 79********************************************************99975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	9.41E-11	1	37	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.2E-12	1	35	IPR009057	Homeodomain-like
PROSITE profile	PS50071	13.264	1	27	IPR001356	Homeobox domain
Pfam	PF00046	1.5E-9	1	25	IPR001356	Homeobox domain
CDD	cd00086	4.18E-10	1	28	No hit	No description
PROSITE pattern	PS00027	0	2	25	IPR017970	Homeobox, conserved site
Pfam	PF02183	3.9E-13	27	66	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 204 aa Download sequence Send to blast
QLARALGLQP RQVAIWFQNR RARWKTKQLE KDYDALRRQL DAARAENDAL LAHNKKLQAE 60 IMALKGGGGG GGRQEAASEL INLNVKETEA SCSNRSENSS EINLDISRPQ AAPPAADESP 120 TMNSYRGLPF YASAARADID QLLQSGHHPS PPAAPKMELG HGAADTAPAT VGGGGGTFGS 180 LLCGAAVDEQ PPFWPWADGH HSFQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	27	RRARWKTKQ
2	64	72	KGGGGGGGR

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.17260	0.0	bud\| inflorescence

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and panicles. {ECO:0000269\|PubMed:17999151}.
Uniprot	TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and panicles. {ECO:0000269\|PubMed:17999151}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025796230.1	1e-108	homeobox-leucine zipper protein HOX23-like
Swissprot	A2Z734	1e-78	HOX23_ORYSI; Homeobox-leucine zipper protein HOX23
Swissprot	Q94GL5	1e-78	HOX23_ORYSJ; Homeobox-leucine zipper protein HOX23
TrEMBL	A0A1E5V6C7	1e-108	A0A1E5V6C7_9POAL; Homeobox-leucine zipper protein HOX23
STRING	Pavir.Ia02126.1.p	1e-104	(Panicum virgatum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69780.1	4e-38	HD-ZIP family protein

Publications ? help Back to Top
Rice Chromosome 10 Sequencing Consortium In-depth view of structure, activity, and evolution of rice chromosome 10. Science, 2003. 300(5625): p. 1566-9 [PMID:12791992]