PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004578
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family YABBY
Protein Properties Length: 204aa    MW: 22799.7 Da    PI: 8.6136
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-50576PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY238.12e-7371705170
      YABBY   5 ssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkee.lleelkveeenlksnvekeesastsvsseklse 103
                  +++vCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsvnl+  ++ l+ +++l+e++k + +  +l+++  +l+     ++s++   +++  + 
  Sof004578   7 APADHVCYVHCNFCNTVLAVSVPGNSMLNIVTVRCGHCTNLLSVNLRALMHSLPEQDQLQENIKVHgINGTLHDQCGHLEL---GSSSSKFRLPMMYSPX 103
                5689*******************************************************9999987444454444444433...3333333333322233 PP

      YABBY 104 nedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                ne+    ++ +  rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  Sof004578 104 NEHLLQEQTLNNARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 170
                4443344445679****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046905.7E-738170IPR006780YABBY protein
SuperFamilySSF470954.84E-8117164IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.7E-5117164IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MSSAQIAPAD HVCYVHCNFC NTVLAVSVPG NSMLNIVTVR CGHCTNLLSV NLRALMHSLP  60
EQDQLQENIK VHGINGTLHD QCGHLELGSS SSKFRLPMMY SPXNEHLLQE QTLNNARPPE  120
KRQRVPSAYN RFIKEEIRRI KANNPDISHR EAFSTAAKNW AHYPNIHFGL NSGREGGKKL  180
VDEAVTTSTG FGKEPRFLLI DVRA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.93811e-173bud| inflorescence| leaf| seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002442565.11e-133protein YABBY 6
SwissprotQ2QM174e-90YAB6_ORYSJ; Protein YABBY 6
TrEMBLC5YSF31e-132C5YSF3_SORBI; Uncharacterized protein
STRINGSb08g022030.11e-133(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.24e-58YABBY family protein