PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004604
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family LBD
Protein Properties Length: 203aa    MW: 20921.9 Da    PI: 8.3769
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17420472PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-580133726PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260140.94.1e-44371361100
     DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                +CaaCk+lrr+Ca++Cv+apyfp  +p+kfanvhk+FGasnv+kll+++p ++r da+sslvyeA+ar+rdPvyG+vg i++lqqq+e l+a+lal+++e
  Sof004604  37 PCAACKLLRRRCAAGCVFAPYFPPGEPHKFANVHKVFGASNVSKLLQEIPVQHRGDAVSSLVYEANARVRDPVYGCVGAISSLQQQVEALQAQLALAQAE 136
                7***********************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.6936137IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-4337134IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MRDAVVVMAV PGAGAGAGGG KAGAGGGGGG GASSAAPCAA CKLLRRRCAA GCVFAPYFPP  60
GEPHKFANVH KVFGASNVSK LLQEIPVQHR GDAVSSLVYE ANARVRDPVY GCVGAISSLQ  120
QQVEALQAQL ALAQAEMVRL KMSNDYILHR LKAARTGGGS SYTGSPSSMS SPKTAEPEVH  180
CKATPELLDM VVDQPSMDDA HFW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A1e-503613910113LOB family transfactor Ramosa2.1
5ly0_B1e-503613910113LOB family transfactor Ramosa2.1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11826GGKAGAGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.170210.0inflorescence| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed predominantly in roots, and at low levels in shoots, floral stems and open flowers. {ECO:0000269|PubMed:12068116}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466719.11e-94LOB domain-containing protein 4 isoform X1
SwissprotQ8LBW32e-57LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A3L6TSK81e-101A0A3L6TSK8_PANMI; LOB domain-containing protein 4-like
STRINGSb01g012810.15e-94(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31320.14e-37LOB domain-containing protein 4
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]