PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004684
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family WRKY
Protein Properties Length: 200aa    MW: 21564 Da    PI: 8.614
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-979133733PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-979133734PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.44.4e-216491659
               TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY 16 kgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59
               + +++prsYY+Ct++gCpv+k+ver+++dpk v++tYeg+Hnhe
  Sof004684  6 RPNPNPRSYYKCTHTGCPVRKHVERASHDPKSVITTYEGKHNHE 49
               5699***************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081125.763151IPR003657WRKY domain
SMARTSM007741.3E-14450IPR003657WRKY domain
SuperFamilySSF1182906.67E-17551IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.1E-20651IPR003657WRKY domain
PfamPF031061.7E-15749IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
XRSTTRPNPN PRSYYKCTHT GCPVRKHVER ASHDPKSVIT TYEGKHNHEV PASRNASHEM  60
STAPMKPVVH PINSNMPGLG GMMRACDPRV FTNQYSQAAE SDTISLNLGV GISPNHSDAT  120
NQMQSSVPEP MQYQMQHMAP VYGSMGLPGM PVTAVPGNAA SSIYGSREEK GNEGFTFKAA  180
PLDRSANLCY SSAGNLVMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-192522878Probable WRKY transcription factor 4
2lex_A3e-192522878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.146943e-82bud| crown| inflorescence| meristem| root| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Peak of expression 12 days after pollination. {ECO:0000269|PubMed:12953112}.
UniprotTISSUE SPECIFICITY: Expressed in endosperm, but not in leaves. {ECO:0000269|PubMed:12953112}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958143.11e-129WRKY transcription factor SUSIBA2
RefseqXP_021310435.11e-129WRKY transcription factor SUSIBA2-like isoform X1
RefseqXP_021310436.11e-130WRKY transcription factor SUSIBA2-like isoform X2
SwissprotQ6VWJ61e-104WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLK3ZT341e-130K3ZT34_SETIT; Uncharacterized protein
STRINGSi029245m1e-128(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.15e-30WRKY family protein