PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004721
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ZF-HD
Protein Properties Length: 198aa    MW: 20513.5 Da    PI: 6.7855
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17263100PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-75287PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer108.92.8e-343589558
  ZF-HD_dimer  5 rYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58
                  Y+eClkNhAaslGghavDGCgEfmps+g++ +++++lkCaACgCHRnFHRr ve
    Sof004721 35 LYRECLKNHAASLGGHAVDGCGEFMPSPGANpADPTSLKCAACGCHRNFHRRAVE 89
                 7***************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.4E-283588IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-223686IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.2073687IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.3E-313687IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MDVKYKPVMF PNGAALKKQV KPAAVAPAGV GGEPLYRECL KNHAASLGGH AVDGCGEFMP  60
SPGANPADPT SLKCAACGCH RNFHRRAVEG SPPPPAPAPL ALPAPPPPSV LHGQPHRGGE  120
ETPEDRHHPG VVDADDSDSE SEGSEYHEER SVSPHPAANH VPAPVAQQPX GPAASYFCTA  180
PHMLLSLGFR GAPRAAVX
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.160280.0inflorescence| leaf
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001145929.28e-68uncharacterized protein LOC100279452
SwissprotQ6ER213e-39ZHD9_ORYSJ; Zinc-finger homeodomain protein 9
TrEMBLB6TFI12e-66B6TFI1_MAIZE; ZF-HD homeobox protein
TrEMBLB7ZY682e-66B7ZY68_MAIZE; Uncharacterized protein
TrEMBLK0DG722e-66K0DG72_MAIZE; ZHD2 ZF-HD type transcription factor (Fragment)
STRINGGRMZM2G161315_P013e-67(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69600.12e-26zinc finger homeodomain 1