PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004729
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 197aa    MW: 20535 Da    PI: 6.0437
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17285611PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-100408PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.16.9e-2152100355
        AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                y+G+r+++ +grW+AeIrdp++    +r++lg++ t+e+Aa+a++aa+++++g
  Sof004729  52 YRGIRRRP-WGRWAAEIRDPRK---GARVWLGTYATPEDAARAYDAAAREIRG 100
                9*******.**********954...4*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541718.5E-2351109IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.2E-3251108IPR001471AP2/ERF domain
SMARTSM003802.3E-3551114IPR001471AP2/ERF domain
PROSITE profilePS5103224.7551108IPR001471AP2/ERF domain
PfamPF008471.3E-1451100IPR001471AP2/ERF domain
PRINTSPR003671.6E-105263IPR001471AP2/ERF domain
CDDcd000186.46E-1952110No hitNo description
PRINTSPR003671.6E-107490IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MCGGAIIADF LPADARRPAT DDTISASLLS GEDHLEELPP ARLPLPGRKT AYRGIRRRPW  60
GRWAAEIRDP RKGARVWLGT YATPEDAARA YDAAAREIRG PKAKLNFPPA VGAGGAREPA  120
AKRRRKSAAA AEESSGSSPA AATTVVVPGG SGGGGGGETL RDCMSGLEAF LGLQEEAEAA  180
DKGGDVEAWE PVDLMFA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-2152114669ATERF1
3gcc_A4e-2152114669ATERF1
5wx9_A1e-20521141578Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.158970.0callus| inflorescence| leaf| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004962330.11e-75ethylene-responsive transcription factor ERF071
TrEMBLA0A0A9TEE14e-76A0A0A9TEE1_ARUDO; Uncharacterized protein
STRINGPavir.J05942.1.p3e-83(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.11e-24ERF family protein