PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004769
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family WRKY
Protein Properties Length: 195aa    MW: 21033.3 Da    PI: 10.4571
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17284746PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-77612PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY537e-17127156231
                --SS-EEEEEEE--TT-SS-EEEEEE-STT CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsag 31 
                dDg++WrKYGqK++ g+++pr+YYrCt+++
  Sof004769 127 DDGHSWRKYGQKDILGAKHPRAYYRCTHPN 156
                8***************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-15121157IPR003657WRKY domain
PROSITE profilePS5081113.85121153IPR003657WRKY domain
SuperFamilySSF1182905.49E-14125156IPR003657WRKY domain
SMARTSM007749.2E-14126189IPR003657WRKY domain
PfamPF031061.3E-13127155IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MADAVESGGR ARLVSELGRV QDLVRQLELQ LRAPADAASV DLCRRLVHQV VALTDRSIGM  60
LHSSPDLAHS PPLSASPISS DAASDHHHNH PFRPASASPK KRKATARWTS QQVRVSAAGG  120
GAEGPADDGH SWRKYGQKDI LGAKHPRAYY RCTHPNSQNW PXPPNRCSAP TNNPGLLDVV  180
NHGEATWKAR GSKKA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.165150.0root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002444278.13e-87probable WRKY transcription factor 41
TrEMBLA0A1Z5RAB57e-86A0A1Z5RAB5_SORBI; Uncharacterized protein
STRINGSb07g019400.11e-86(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.11e-13WRKY family protein