PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof004829

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

Trihelix

Protein Properties

Length: 191aa MW: 21332.9 Da PI: 9.4903

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17471493	PU_unref	Unigene	View CDS
PUT-157a-Saccharum_officinarum-70723	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	64.6	2.1e-20	42	111	2	71
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr 71 Wt e+++Liea+r+++e+ g + ++W++v +++++ g++rs++qC+++w+nl ++ykk+++ e ++ Sof004829 42 WTLPETMLLIEAKRKVHEERHPGDQGLARWRWVEDYCWRAGCRRSQNQCNDRWDNLMRDYKKVRAYELSG 111 ***************************************************************9988666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	8.06	34	98	IPR017877	Myb-like domain
Gene3D	G3DSA:1.10.10.60	8.8E-6	37	100	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.07E-7	37	99	IPR009057	Homeodomain-like
Pfam	PF13837	1.5E-14	40	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MDDTMGGTRG LLGQAREDEQ ARNVVVGAGA LTVARDYRRG NWTLPETMLL IEAKRKVHEE 60 RHPGDQGLAR WRWVEDYCWR AGCRRSQNQC NDRWDNLMRD YKKVRAYELS GAGAGAGGKA 120 PSYWAMGRPE RKERGLPSNL LREIYDAMGE VIERRMSMGC GGSSGGPRGA FTAAASSFSL 180 LDXPMQAFPL R

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.7456	0.0	inflorescence

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002466697.1	1e-110	trihelix transcription factor ASR3
TrEMBL	C5WQB7	1e-109	C5WQB7_SORBI; Uncharacterized protein
STRING	Sb01g012490.1	1e-110	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31310.1	1e-42	Trihelix family protein