PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof004830
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family TALE
Protein Properties Length: 191aa    MW: 21519.8 Da    PI: 10.2045
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-89647PU_unrefplantGDBView CDS
PUT-157a-Saccharum_officinarum-89648PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox24.35.4e-081281612154
                HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                k +yp++e++++L +++gL+ +q+ +WF N+R +
  Sof004830 128 KWPYPTEEDKARLVQETGLQLKQINNWFINQRKR 161
                569*****************************87 PP
2ELK315.8e-1182103122
        ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                ELKh+L+++Y+ +L+++++E++
  Sof004830  82 ELKHELKQGYRDKLVDIREEIL 103
                9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011880.001182103IPR005539ELK domain
PROSITE profilePS5121310.19682102IPR005539ELK domain
PfamPF037891.8E-582103IPR005539ELK domain
PROSITE profilePS5007111.58102165IPR001356Homeobox domain
SMARTSM003894.0E-10104169IPR001356Homeobox domain
SuperFamilySSF466895.99E-16104169IPR009057Homeodomain-like
CDDcd000862.82E-11105166No hitNo description
Gene3DG3DSA:1.10.10.607.9E-25109166IPR009057Homeodomain-like
PfamPF059201.6E-18122161IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
LHSCSRSRSL SLSRSSSSRA PAARPHPSPG EGTGATMSDD EDNQVDSESN MFDGNEGSDG  60
MGFGPLMLTE GERSLVERVR QELKHELKQG YRDKLVDIRE EILRKRRAGK LPGDTASTLK  120
AWWQAHSKWP YPTEEDKARL VQETGLQLKQ INNWFINQRK RNWHNNPASS SSDKSKRKRS  180
TAGDGNAKQS W
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1158178RKRNWHNNPASSSSDKSKRKR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.150531e-164bud| crown| inflorescence| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Isoform 1 is expressed in roots, leaf blades, leaf sheaths and flowers. Isoform 2 is expressed in leaf blades, leaf sheaths and flowers. {ECO:0000269|PubMed:12034492}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304515.11e-117homeobox protein knotted-1-like 11 isoform X1
SwissprotQ0E3C31e-105KNOS2_ORYSJ; Homeobox protein knotted-1-like 2
TrEMBLA0A194YKK61e-116A0A194YKK6_SORBI; Uncharacterized protein
STRINGSb10g025440.11e-117(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.23e-84KNOTTED1-like homeobox gene 3