PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof004871

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

NAC

Protein Properties

Length: 189aa MW: 19806.9 Da PI: 10.8891

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17271371	PU_ref	Unigene	View CDS
PUT-157a-Saccharum_officinarum-56111	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	53.2	1e-16	6	118	32	128
NAM 32 evikev.diykvePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.....kgelvglkktLvfy....kgrapkg 116 vi+ v d+y+++Pwd +++e e yfF+ r + ++ rat+sg+Wk +gk+k+v+ ++ lvg+k+ ++f k k+ Sof004871 6 AVIPVVrDLYNLDPWDVVVpapapD-ASSEGEKYFFAVRPAGAG-KSGGARATASGRWKPSGKEKPVVLPhpcggGRLLVGVKRAMTFVprrkK----KA 99 4678888********53334332.23455999988765.678899*************99899866677******65432....33 PP NAM 117 e.......ktdWvmheyrl 128 + Wvmheyrl Sof004871 100 SpsasaalAIGWVMHEYRL 118 32233334678****98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	27.23	1	142	IPR003441	NAC domain
SuperFamily	SSF101941	3.4E-25	3	142	IPR003441	NAC domain
Pfam	PF02365	4.8E-9	19	118	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
XSCPAAVIPV VRDLYNLDPW DVVVPAPAPD ASSEGEKYFF AVRPAGAGKS GGARATASGR 60 WKPSGKEKPV VLPHPCGGGR LLVGVKRAMT FVPRRKKKAS PSASAALAIG WVMHEYRLAA 120 PLHKNGCSLA QGEWVVCRVF QKGSSRPTRT RRRRAVPXAH PAAAASPSPS SASSCVTDGS 180 NSDLXEVSG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-14	13	145	53	168	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-14	13	145	53	168	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-14	13	145	53	168	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-14	13	145	53	168	NO APICAL MERISTEM PROTEIN
3swm_A	1e-14	13	145	56	171	NAC domain-containing protein 19
3swm_B	1e-14	13	145	56	171	NAC domain-containing protein 19
3swm_C	1e-14	13	145	56	171	NAC domain-containing protein 19
3swm_D	1e-14	13	145	56	171	NAC domain-containing protein 19
3swp_A	1e-14	13	145	56	171	NAC domain-containing protein 19
3swp_B	1e-14	13	145	56	171	NAC domain-containing protein 19
3swp_C	1e-14	13	145	56	171	NAC domain-containing protein 19
3swp_D	1e-14	13	145	56	171	NAC domain-containing protein 19
4dul_A	1e-14	13	145	53	168	NAC domain-containing protein 19
4dul_B	1e-14	13	145	53	168	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.13755	0.0	bud\| leaf\| meristem\| root\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021320646.1	7e-82	NAC domain-containing protein 18
TrEMBL	A0A1Z5RBQ7	2e-80	A0A1Z5RBQ7_SORBI; Uncharacterized protein
STRING	GRMZM2G054252_P02	4e-78	(Zea mays)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76420.1	8e-14	NAC family protein