PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof005034
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB
Protein Properties Length: 180aa    MW: 19648.3 Da    PI: 8.224
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17454978PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-109776PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.26e-161562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W++eEd++l d++ ++G g+W++ +++ g++R +k+c++rw +yl
        Sof005034 15 KGLWSPEEDQKLRDYILLHGHGCWSALPAKAGLHRNGKSCRLRWINYL 62
                     678*******************************************97 PP
2Myb_DNA-binding56.37.2e-1869113248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g +++eE+e    +++ lG++ W++Iar+++ gRt++++k++w++yl
        Sof005034  69 GVFSPEEEETVMSLHATLGNK-WSRIARHLP-GRTDNEVKNYWNSYL 113
                      789******************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.041062IPR017930Myb domain
SuperFamilySSF466893.67E-2912109IPR009057Homeodomain-like
SMARTSM007171.8E-121464IPR001005SANT/Myb domain
PfamPF002496.5E-141562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-211669IPR009057Homeodomain-like
CDDcd001676.10E-111862No hitNo description
PROSITE profilePS5129425.50963117IPR017930Myb domain
SMARTSM007171.5E-1567115IPR001005SANT/Myb domain
PfamPF002492.4E-1669113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.0E-2670116IPR009057Homeodomain-like
CDDcd001671.51E-1271113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MGCKACDKPK PNYRKGLWSP EEDQKLRDYI LLHGHGCWSA LPAKAGLHRN GKSCRLRWIN  60
YLRPGLKHGV FSPEEEETVM SLHATLGNKW SRIARHLPGR TDNEVKNYWN SYLKKRVEGK  120
EGPSTSPAPA ASNSGAAADS DDSHCVKPGD DGTAQEAAGA NPXPDFVGSS EPRESSSGDX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-26111183109B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.96100.0stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed at very low level. Expressed in cauline leaves. {ECO:0000269|PubMed:11581165}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that promotes photomorphogenesis in the light by participating in the transmission of phytochrome A (phyA) signals to downstream responses (PubMed:11581165, PubMed:19482971). Probably acts by activating expression of light-induced genes. In darkness, its degradation prevents the activation of light-induced genes (PubMed:11581165). {ECO:0000269|PubMed:11581165, ECO:0000269|PubMed:19482971}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By hormones or elicitors treatment. By exposure to abiotic stress. {ECO:0000269|PubMed:9839469}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002454571.11e-105transcription factor LAF1
SwissprotQ9M0K48e-54LAF1_ARATH; Transcription factor LAF1
TrEMBLA0A0C6WCR11e-117A0A0C6WCR1_9POAL; ScMYB6 protein
STRINGSb04g033680.11e-105(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52260.12e-57myb domain protein 19
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]