PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof005144
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bHLH
Protein Properties Length: 173aa    MW: 19113.9 Da    PI: 9.1426
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17422904PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-122231PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.26.8e-092367554
               HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               h+++Er RR+ri +++  L+el+P+       K + a++L +  +Y+k L
  Sof005144 23 HSIAERLRRERIAERMRALQELVPNT-----NKTDRAAMLDEILDYVKFL 67
               99***********************7.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.17E-91672No hitNo description
SuperFamilySSF474592.09E-151677IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.771867IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-141978IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-62367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.2E-92473IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MAPQPPAPRP KVRARRGQAT DPHSIAERLR RERIAERMRA LQELVPNTNK TDRAAMLDEI  60
LDYVKFLRLQ VKVLSMSRLG GAGAVAQLVA DVPLSVKGEA SDGGSTQHIW EKWSTDGTEK  120
QVAKLMEEDI GAAMQFLQSK ALCMMPISLA MAIYDTQHSQ DGHSLKHEPN TSS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12732RLRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.137360.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461549.11e-119transcription factor UNE12
SwissprotO227684e-75UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A1W0W2H11e-119A0A1W0W2H1_SORBI; Uncharacterized protein
STRINGSb02g004570.11e-118(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.31e-57bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]