PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof005167
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family MYB
Protein Properties Length: 171aa    MW: 19139.7 Da    PI: 10.6175
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17307310PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-104109PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.3e-171461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg W++eEd++l++ ++++G g+W+++++  g+ R++k+c++rw +yl
        Sof005167 14 RGLWSPEEDDKLINHIAKYGHGCWSSVPKLAGLERCGKSCRLRWINYL 61
                     788*******************************************97 PP
2Myb_DNA-binding53.55.6e-1767111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg++++eE++l+++++ ++G++ W+ Ia  ++ gRt++++k++w++y
        Sof005167  67 RGAFSQEEEDLIIHLHSMMGNK-WSQIATQLP-GRTDNEVKNFWNSY 111
                      89********************.*********.************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129418.993961IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.0E-26964IPR009057Homeodomain-like
SuperFamilySSF466891.52E-3012108IPR009057Homeodomain-like
SMARTSM007175.1E-141363IPR001005SANT/Myb domain
PfamPF002492.4E-161461IPR001005SANT/Myb domain
CDDcd001679.03E-121761No hitNo description
PROSITE profilePS5129427.00862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.4E-2765116IPR009057Homeodomain-like
SMARTSM007177.2E-1666114IPR001005SANT/Myb domain
PfamPF002495.7E-1667111IPR001005SANT/Myb domain
CDDcd001671.65E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MARRTSGPKK KLRRGLWSPE EDDKLINHIA KYGHGCWSSV PKLAGLERCG KSCRLRWINY  60
LRPDLKRGAF SQEEEDLIIH LHSMMGNKWS QIATQLPGRT DNEVKNFWNS YIKKKLRQRG  120
IDPATHKPLP LAAEASRAAA AGSSRTAVFS DAELILSSTT AAGQHMAAAX W
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-301111624128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.61990.0crown| inflorescence| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in stems, flowers and seeds. Weakly expressed in leaves and roots. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002461087.11e-108transcription factor MYB61
SwissprotQ8LPH63e-74MYB86_ARATH; Transcription factor MYB86
TrEMBLC5X3A01e-106C5X3A0_SORBI; Uncharacterized protein
STRINGSb02g040480.11e-107(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26660.11e-75myb domain protein 86