PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof005297
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bHLH
Protein Properties Length: 161aa    MW: 17875.9 Da    PI: 10.0274
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17458593PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-72960PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.40.0001449821654
               HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
               i +++  L++++ +      +K + a++L ++++YIk L
  Sof005297 49 IGEKITALQQIVSPF-----GKTDTASVLFETIKYIKFL 82
               667889999999988.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.0743382IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.45E-44887No hitNo description
SuperFamilySSF474591.44E-94895IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-84892IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 161 aa     Download sequence    Send to blast
XARSSSSGSG AASDRKKRPS KERTSTVKKS KQEGSKPSPP KQQVPKVKIG EKITALQQIV  60
SPFGKTDTAS VLFETIKYIK FLHEQVQLLS EPYTNSSRSK VNQLPWGDHA AAETSKGGDE  120
AEHDLRDRGL CLVPVSWTPE VYRDGTAMDY WTPAYRGCLY R
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.152300.0inflorescence
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002452768.23e-96uncharacterized protein LOC8073915
SwissprotQ9FYJ69e-42BH111_ARATH; Transcription factor bHLH111
TrEMBLC5Y1A97e-95C5Y1A9_SORBI; Uncharacterized protein
STRINGSb04g032150.18e-97(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G31050.11e-37bHLH family protein