PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof005318
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bHLH
Protein Properties Length: 159aa    MW: 16411.6 Da    PI: 10.0292
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17398470PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-46643PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.41.3e-0835100655
                HHHHHHHHHHHHHHHHHHHCTSCCC..................TTS-.STCHHHHHHHHHHHHHHH CS
        HLH   6 nerErrRRdriNsafeeLrellPkas...............kapskK.lsKaeiLekAveYIksLq 55 
                + +E++RR +++s   +L +llP+a                ++++k  ++  + L  A  YIk+L+
  Sof005318  35 KDVEKNRRLHMKSLCLKLSSLLPPAAthasllsdaaaaaayNPNNKDtVTQLDQLDSAAAYIKQLK 100
                689*********************555*************94444445****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.742999IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.5E-1133109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-934110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-53599IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 159 aa     Download sequence    Send to blast
MKSRRQTSGG SSAACAAAGE ANTHSSGGGC KLERKDVEKN RRLHMKSLCL KLSSLLPPAA  60
THASLLSDAA AAAAYNPNNK DTVTQLDQLD SAAAYIKQLK ERIEALKQRK AGGPGQAAGC  120
ASASGVSSGG GVRMPVIEVR YQDGTLDVVL ISDAGRAFK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.69110.0inflorescence| seed
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004967963.12e-64transcription factor bHLH168
TrEMBLA0A1E5WHH63e-63A0A1E5WHH6_9POAL; Uncharacterized protein
STRINGSi002847m9e-64(Setaria italica)