PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof005351
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NAC
Protein Properties Length: 156aa    MW: 17476.8 Da    PI: 9.866
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17368619PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-6046PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM46.11.5e-14101247114
        NAM   7 FhPtdeelvveyLkkkvegkkleleev..ikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratk..sgyWkatgkdkevlskk 96 
                F P  +el+ ++L+ k++g++l+++ +  ++++diy+++P  L +      + k+e+++w+fF++ + k++t++rk+r+++   g+W++    ++vl+ +
  Sof005351  10 FTP--SELL-CFLRLKIAGEPLPATAAahFHDADIYTADPALLATlfdpapEKKGESSSWFFFTHVRPKSSTDSRKSRQVAggVGTWHSERAPRRVLHDE 106
                655..4788.89*********665442249*************755778765566777********************66623678************99 PP

        NAM  97 gelvglkktLvfykgrap 114
                g+ +g  + + +  + ++
  Sof005351 107 GNCTGHSQYFSYKLKIRE 124
                999999999999844333 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100511.4941156IPR003441NAC domain
SuperFamilySSF1019413.66E-149120IPR003441NAC domain
PfamPF023651.8E-510124IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 156 aa     Download sequence    Send to blast
MPPPPGDCSF TPSELLCFLR LKIAGEPLPA TAAAHFHDAD IYTADPALLA TLFDPAPEKK  60
GESSSWFFFT HVRPKSSTDS RKSRQVAGGV GTWHSERAPR RVLHDEGNCT GHSQYFSYKL  120
KIREERQRED RMVHVGIQRR AKKPITSAFT GAKPTW
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.6440.0meristem| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021303467.13e-65uncharacterized protein LOC8077939
TrEMBLA0A1Z5R2B42e-62A0A1Z5R2B4_SORBI; Uncharacterized protein
STRINGSb09g018837.11e-61(Sorghum bicolor)