PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof005394
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRAS
Protein Properties Length: 151aa    MW: 16580.9 Da    PI: 11.5355
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17296490PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-34287PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS1241.8e-384151222374
       GRAS 222 serdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                 +rde+L+ v+ l P+vv++veqe++ n++++ +rf++a+ +y a+++sl+a+  r+s +r+  E + l++++ n+va eg +r+er+e ++kWr+r+++
  Sof005394   4 GPRDELLRGVRALCPRVVTLVEQELNANTAPLPARFADACTHYGAVLESLDATRFRDSAQRARAETA-LANKAANAVAREGPDRVERCEVFGKWRARFGM 102
                479***********************************************99999***********9.99****************************** PP

       GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                aG++pv++++ +a+ +++ lr     g+ v+ +s+ l  gW++r ++++SaWr
  Sof005394 103 AGLRPVAIGQGIADRVRARLR----PGFDVNLDSDRLGVGWMGRVVTVASAWR 151
                ***************999886....59*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098517.9541135IPR005202Transcription factor GRAS
PfamPF035146.2E-364151IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
RTRGPRDELL RGVRALCPRV VTLVEQELNA NTAPLPARFA DACTHYGAVL ESLDATRFRD  60
SAQRARAETA LANKAANAVA REGPDRVERC EVFGKWRARF GMAGLRPVAI GQGIADRVRA  120
RLRPGFDVNL DSDRLGVGWM GRVVTVASAW R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-134151216375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.123020.0inflorescence| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, leaves and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004953458.17e-81scarecrow-like protein 8
SwissprotQ9FYR71e-46SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A0A9FCJ71e-79A0A0A9FCJ7_ARUDO; Uncharacterized protein
TrEMBLK3YQT32e-79K3YQT3_SETIT; Uncharacterized protein
STRINGSi016627m3e-80(Setaria italica)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.13e-41SCARECROW-like 8