PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof005420
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family C2H2
Protein Properties Length: 149aa    MW: 16389.5 Da    PI: 8.3003
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-4556PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H223.81.1e-077394223
               EETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
               +C+ Cg+sF+ + +Lk+H+++H
  Sof005420 73 ECQQCGMSFKKPAHLKQHMQSH 94
               5*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.66E-82394No hitNo description
SMARTSM00355142547IPR015880Zinc finger, C2H2-like
SMARTSM003550.00567294IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.1577297IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-67395IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF000961.5E-57394IPR007087Zinc finger, C2H2
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 149 aa     Download sequence    Send to blast
MGEGTESGGG GGATTAAPLR DIRRYKCGFC DVVRSKKCLL RAHVLEHHKD EVDALGGYWE  60
GGDGGPRKEL SRECQQCGMS FKKPAHLKQH MQSHSLEIWM CEALDXHRTP KCGKALNGPV  120
PGWGDPPEKA PSRVPPFTLL FRLFVDMNA
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001349023.12e-52uncharacterized LOC100383605 isoform 1
RefseqXP_008648128.19e-52uncharacterized LOC100383605 isoform X1
TrEMBLC0J7J84e-59C0J7J8_MAIZE; Truncated transcription factor IIIA EI isoform (Fragment)
STRINGGRMZM2G050939_P028e-52(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72050.24e-16transcription factor IIIA