PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof005572

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

HSF

Protein Properties

Length: 131aa MW: 15230.4 Da PI: 8.2564

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Sof#S17338013	PU_unref	Unigene	View CDS
PUT-157a-Saccharum_officinarum-115508	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	115.9	2.5e-36	27	119	2	103
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 Fl+k+y++++d+ +++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+ ++ weF+++ F+kg k+ll +i+ Sof005572 27 FLTKTYQLVDDPCTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGAKHLLAEIH 114 9**************************************************************999.........**************** PP XXXXX CS HSF_DNA-bind 99 rkkse 103 rkks+ Sof005572 115 RKKSS 119 997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	2.6E-38	17	110	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	5.1E-58	23	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	5.58E-34	24	116	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	3.9E-32	27	116	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.8E-20	27	50	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.8E-20	65	77	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	66	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	1.8E-20	78	90	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MAFLVERCGE MVVSMESSHA KPVPAPFLTK TYQLVDDPCT DHIVSWGEDD TTFVVWRPPE 60 FARDLLPNYF KHNNFSSFVR QLNTYGFRKI VADRWEFANE FFRKGAKHLL AEIHRKKSSQ 120 PLPTPLPPHQ P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ldu_A	1e-23	23	119	17	123	Heat shock factor protein 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.14574	0.0	inflorescence\| meristem\| seed\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269\|PubMed:16202242}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002463264.1	1e-93	heat stress transcription factor B-4b
Swissprot	Q7XHZ0	1e-79	HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBL	C5X3D4	3e-92	C5X3D4_SORBI; Uncharacterized protein
STRING	Sb02g040790.1	4e-93	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	4e-66	heat shock transcription factor B4

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]