PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof005597
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family DBB
Protein Properties Length: 127aa    MW: 13334.1 Da    PI: 5.8896
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17266613PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-115974PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box27.18.4e-092258437
   zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
               r C+ +  ++++l+C++++ +lC+ C +  H g    H
  Sof005597 22 RPCDACAAEPARLHCREDGAFLCPGCDDRAH-GagsrH 58
               78***************************99.445667 PP
2zf-B_box25.33.2e-0861105341
   zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                 + C+ +e+ ++   C+ +   lC+ C   +H+       H++ p
  Sof005597  61 VWLCEVCEHAPAAVTCRADAAALCAACDADIHSAnplarrHERLP 105
                689*****************************6688888898877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.9111963IPR000315B-box-type zinc finger
SMARTSM003367.1E-51963IPR000315B-box-type zinc finger
PfamPF006434.6E-72259IPR000315B-box-type zinc finger
CDDcd000216.21E-62263No hitNo description
PROSITE profilePS5011910.42459106IPR000315B-box-type zinc finger
PfamPF006431.5E-661106IPR000315B-box-type zinc finger
SMARTSM003364.6E-964106IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MDTAVELEQK PAVGYWSVVG ARPCDACAAE PARLHCREDG AFLCPGCDDR AHGAGSRHAR  60
VWLCEVCEHA PAAVTCRADA AALCAACDAD IHSANPLARR HERLPVAPFF GALADAPQPF  120
PSPAFAA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.160801e-176leaf
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025811633.15e-67zinc finger protein CONSTANS-LIKE 3-like
SwissprotQ9SK539e-38COL3_ARATH; Zinc finger protein CONSTANS-LIKE 3
TrEMBLA0A3L6QDQ19e-66A0A3L6QDQ1_PANMI; Zinc finger protein CONSTANS-LIKE 3-like
STRINGSb04g025660.13e-66(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24790.29e-25CONSTANS-like 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Tripathi P,Carvallo M,Hamilton EE,Preuss S,Kay SA
    Arabidopsis B-BOX32 interacts with CONSTANS-LIKE3 to regulate flowering.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(1): p. 172-177
    [PMID:27999181]