PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof005806
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ZF-HD
Protein Properties Length: 82aa    MW: 8573.45 Da    PI: 7.8353
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Sof#S17454203PU_unrefUnigeneView CDS
PUT-157a-Saccharum_officinarum-80622PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.46.9e-331570359
  ZF-HD_dimer  3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59
                  v+Y+eC++NhAas+GghavDGC+Efm+s g++gtaaal CaACgCHR+FHRreve+
    Sof005806 15 VVHYRECQRNHAASIGGHAVDGCREFMAS-GANGTAAALMCAACGCHRSFHRREVET 70
                 799*************************9.999*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257741.0E-181269IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.0E-301668IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015664.8E-271768IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.5571867IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Sequence ? help Back to Top
Protein Sequence    Length: 82 aa     Download sequence    Send to blast
MANGTAARGK EAAKVVHYRE CQRNHAASIG GHAVDGCREF MASGANGTAA ALMCAACGCH  60
RSFHRREVET DDRDCSSTTS SG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.160391e-140bud| inflorescence| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.
UniProtInhibits zinc finger homeodomain (ZHD) transcription factors, by interacting with them to prevent both their nuclear localization and their DNA-binding properties. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021301405.12e-49mini zinc finger protein 1
SwissprotB8BIU86e-29MIF1_ORYSI; Mini zinc finger protein 1
SwissprotQ2RB286e-29MIF1_ORYSJ; Mini zinc finger protein 1
TrEMBLC5YQS14e-48C5YQS1_SORBI; Uncharacterized protein
STRINGSb08g001830.17e-49(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28917.11e-26mini zinc finger 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]