PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof005951
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ARR-B
Protein Properties Length: 514aa    MW: 55820.9 Da    PI: 8.5959
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-800133728PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like88.94.6e-28128181155
    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ +t+e+v+SHLQkYRl
  Sof005951 128 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVENITRENVASHLQKYRL 181
                79*******************.********************************8 PP
2Response_reg23.82.2e-09125368109
                   HTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
  Response_reg  68 eepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                    e++lp+i+ +a+ge +++ + +  Ga d+l Kp+ +e+l++
     Sof005951  12 LEMDLPVIMSSANGETQTVMKGITHGACDYLLKPVRIEQLRT 53 
                   4579************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363921.3E-1371514IPR017053Response regulator B-type, plant
Gene3DG3DSA:3.40.50.23001.1E-15180No hitNo description
PROSITE profilePS5011020.4159IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.74E-7358No hitNo description
SuperFamilySSF521723.27E-11363IPR011006CheY-like superfamily
PfamPF000728.0E-6354IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5129411.34125184IPR017930Myb domain
SuperFamilySSF466894.48E-20125185IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.609.2E-30126186IPR009057Homeodomain-like
TIGRFAMsTIGR015579.5E-25128181IPR006447Myb domain, plants
PfamPF002491.7E-6130180IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 514 aa     Download sequence    Send to blast
MVGFKLLELV GLEMDLPVIM SSANGETQTV MKGITHGACD YLLKPVRIEQ LRTIWQHVVR  60
RRSCDAKNNG NDNDDSGKKL QVVSAEGDNG GGNRNKRTSR KGRDDNGDDG DDSDENSNEN  120
GDSSTQKKPR VVWSVELHRK FVAAVNQLGI DKAVPKKILD LMNVENITRE NVASHLQKYR  180
LYLKRLSADA SRQANLTAAF GGRNPAYVNM GLDAFRQYNA YGRYRPVPTT NHSQPNNLLA  240
RMNSPAFGVH GLLPSQPLQI GHTQNNLSAS LGNVGGMNNG NLIRGPHMPL QDTSKCFPTG  300
PSGNSFANIS NNTQLVMTNN LPLQSLEPSN QHHLGRLHSS ADPFNSFVGE SPQFPDLGRC  360
NTNWPTAVSS SNVQELGQKD RIVNGPKLEP LSSFTEASSQ IPLLGNEMQS QVASLASNGL  420
PMPFTQEVVP FAYRSSTNSR EMLNNNLALS NSVINSSLPN LHINGSVFER NIDGSVVPRQ  480
TLGGGNSDGG GVPPLTGGRI DHQAVNSHLN YNNX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-25124187164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.180790.0bud| callus| crown| inflorescence| leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002453411.10.0two-component response regulator ORR24
SwissprotQ6H8050.0ORR24_ORYSJ; Two-component response regulator ORR24
TrEMBLC5XWW50.0C5XWW5_SORBI; Two-component response regulator
STRINGSb04g005580.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.12e-65response regulator 12
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]