PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof005959
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRAS
Protein Properties Length: 508aa    MW: 56235.2 Da    PI: 6.0515
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-72195PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS375.37.9e-1151655071344
       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                l++l+++c +av++ ++  ++al+++l+e +s +g+pmqRl ay++e+L arl+ +++ lyk+l+++e    +sse +++++l++e++P++kf+++ aN 
  Sof005959 165 LRQLIIACGKAVDE-NAFYIDALMSELKEKVSVSGEPMQRLGAYMLEGLTARLSFTGHALYKSLKCKEPV-ATSSELMSYMHLLYEICPFFKFGYMSANG 262
                6899********98.77899************************************************97.789999*********************** PP

       GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198
                aI +av+ge+ +HiiDf+i qG QW++++qaLasRp+  p lRiTg+++++s   +   l  +g++L ++A+++g+pfefn+ v  + +++ +e+L v+p
  Sof005959 263 AIADAVKGEDFIHIIDFQIAQGSQWMTMIQALASRPGRRPYLRITGIDDSNSAhaRGGGLDMVGQKLDRMAQSCGLPFEFNA-VPAASHEVVFEDLCVRP 361
                *************************************************8888889999***********************.688899999******** PP

       GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298
                gEa++Vn+++qlh+++desv +e++rd++L++vkslsP+vv++veqea++n+++F+ r +e+l+yy+a+f+++++  pr+++ ri+ E+++++r+ivn++
  Sof005959 362 GEAIVVNFAYQLHHTPDESVGIENHRDRILRMVKSLSPRVVTLVEQEANTNTAPFFLRYMETLDYYTAMFEAIDVACPRDDKRRISTEQHCVARDIVNLI 461
                **************************************************************************************************** PP

       GRAS 299 acegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkv 344
                acegaer++rhe ++kWr+rl +aGFkp+p+s  ++k++k+l+  +
  Sof005959 462 ACEGAERIKRHEPFGKWRARLAMAGFKPYPFSPVVNKTIKTLVDSY 507
                ******************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.231139508IPR005202Transcription factor GRAS
PfamPF035142.7E-112165507IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MSTRASNRSY GYPDNTQLPY HNGNAMHVGG NGNYYVQQNH DDVNYISSDD GSQSSNSRAQ  60
GFQAQFCTLD SSSANCVYPA HSSTSSQSIS GSPLSQQESH SDHAYGSSPS ASCVTQVPTW  120
TLKDLENVML GPDSDIGSPD SSFLPGTALY DNNWRELLGI QTGDLRQLII ACGKAVDENA  180
FYIDALMSEL KEKVSVSGEP MQRLGAYMLE GLTARLSFTG HALYKSLKCK EPVATSSELM  240
SYMHLLYEIC PFFKFGYMSA NGAIADAVKG EDFIHIIDFQ IAQGSQWMTM IQALASRPGR  300
RPYLRITGID DSNSAHARGG GLDMVGQKLD RMAQSCGLPF EFNAVPAASH EVVFEDLCVR  360
PGEAIVVNFA YQLHHTPDES VGIENHRDRI LRMVKSLSPR VVTLVEQEAN TNTAPFFLRY  420
METLDYYTAM FEAIDVACPR DDKRRISTEQ HCVARDIVNL IACEGAERIK RHEPFGKWRA  480
RLAMAGFKPY PFSPVVNKTI KTLVDSYH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-511675076343GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.105030.0bud| callus| crown| inflorescence| meristem| root
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468350.10.0scarecrow-like protein 21
RefseqXP_021306782.10.0scarecrow-like protein 21
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLC5WUR20.0C5WUR2_SORBI; Uncharacterized protein
STRINGSb01g044280.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.21e-165GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]