PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof005971
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family NF-X1
Protein Properties Length: 500aa    MW: 54019.4 Da    PI: 8.0864
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-560133730PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X119.32.4e-06111128118
   zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                CG H+C+  CH G+CppC
  Sof005971 111 CGVHRCKVNCHDGECPPC 128
                ****************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.7203.1E-177110IPR016040NAD(P)-binding domain
SuperFamilySSF517351.38E-137109IPR016040NAD(P)-binding domain
CDDcd060081.07E-15103149No hitNo description
SMARTSM004383.7E-4111130IPR000967Zinc finger, NF-X1-type
PfamPF014222.9E-5111128IPR000967Zinc finger, NF-X1-type
CDDcd060084.69E-7348399No hitNo description
PfamPF014224.1352378IPR000967Zinc finger, NF-X1-type
SMARTSM004380.32359380IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
XFLFHRNNEG VMFCPFQLSE DGVEMQFATN HLGHFLLTSL LLDTMKATAK STGIEGRIVN  60
LSSVAHHHTY PKGIDFDKLN DEKIYNDKMA YGQSKLANLL HAKVCDKKLP CGVHRCKVNC  120
HDGECPPCLV RVEQKCRCGS SGQMVECYKX VNVSSAATGL VAARRTVGGI GAVSSVVHCL  180
EKLHSLKVAT GIPISARYHV ARSSDVGSNR ASYSATVVIA CPAWRLYSLI SLVPVAELLS  240
TTSALWNTNT ILFASVLSSP ALRTSSLAFM PXWGLSALCG ASNERMHRGT CDAEEHPLRI  300
EGYQVQPTMW EESPMWSPCL QQTLSSSPCD QPPANGDASS SSGGKASCGQ VCGAARRECK  360
HTCTAPCHPS SQCPDLRCEF AVTITCSCGR ITATVPCGAG GASIGDNMFE VSIIQKLPMP  420
LQPVESNGRR VPLVQRKLFF CDEECAKMEK KRVLAGPLTS IHPFGCIPFW LGGDLSRVTQ  480
VGAAIKKRAS SFTWEGEGIF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3rd5_A2e-15711192185MYPAA.01249.C
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.209990.0leaf| stem
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.13e-40NF-X-like 1