PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof005972
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 500aa    MW: 54630.2 Da    PI: 6.1356
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-66641PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP242.51.6e-13269307346
        AP2   3 ykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaa 46 
                y+GVr +k +g+W+AeIr  +     + kr +lg+f+t  +Aa aa
  Sof005972 269 YRGVRLRK-WGKWAAEIRNpF-----TgKRQWLGTFDT-AGAASAA 307
                9*****99.**********55.....45**********.7777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103216.95268331IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.1E-17268319IPR001471AP2/ERF domain
PfamPF008475.4E-8268307IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-14268317IPR016177DNA-binding domain
SMARTSM003801.1E-10268322IPR001471AP2/ERF domain
CDDcd000181.29E-14269300No hitNo description
PRINTSPR003671.6E-7269280IPR001471AP2/ERF domain
PRINTSPR003671.6E-7291307IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
TGXHASGECE GGRWRRRLAP ASEKKRSSQL SYMSSCPFSD LVVVVALIVA VVAVLLRALA  60
CSSRSMRKGL NGWNKSSSML RDGFGVKYSG FLHIRPCDFF EETDGFDRFA LGSVKFLHPE  120
KVSCFSLEVF PFSFGNFGDK XLEFSPAAEE MAPLNHQQVL IKKVLAKKTN TKRMSGFGLK  180
PSAALLKSRP QQQQPPAPVQ PRRRVRVLFE DPDATDSDSD DEEAGAPTGP AANTKRFSFE  240
AFIGKAPAKP VLPAATVAAC TSGGAPESYR GVRLRKWGKW AAEIRNPFTG KRQWLGTFDT  300
AGAASAAYLS ASRSFADEKR RRRGQPXAGF LISYFGKRHS DGVLFVVHLD CSIRAPVAVH  360
LDCSFAHPSP SSVLESTKAA APNPQSPKPV ATPTPPVVLP LPSTESAQVP DDPEFYQDLL  420
RGLQLPDIDP MDFRAGLDAL DVSDAAFCLD DEQDLLLDLG DEELEIDLDL DDINDVFPEM  480
PGCEPRRGMD DFLQTVDFCV
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.83570.0bud| callus| crown| inflorescence| leaf| meristem| root| seed| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002457432.11e-155ethylene-responsive transcription factor 3
TrEMBLC5XQV41e-154C5XQV4_SORBI; Uncharacterized protein
STRINGSb03g007200.11e-155(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.21e-12related to AP2 2