PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof006039
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family HD-ZIP
Protein Properties Length: 469aa    MW: 51520.6 Da    PI: 7.8493
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-377PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.8e-192885457
               -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
   Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  Sof006039 28 YVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 85
               6789****************************************************97 PP
2START175.82.6e-551763832204
                HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEXXT CS
      START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvaelq 99 
                +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++ +++l vi +g  g+++l++++++
  Sof006039 176 IAEETLAEFLSKATGTAVDWVQMVGMKPGPDSIGIIAVSHNCSGVAARACGLVSLEPT-KVAEILKDRPSWYRDCRCVDILHVIPTGngGTIELIYMQTY 274
                68999*****************************************************.8888888888******************************* PP

                TXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHH CS
      START 100 alsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegakt 195
                a+++l++ Rdf+++Ry+  l++g++vi+++S+++ +  p+   ++++vRae+lpSg+li+p+++g+s +++v+hvdl++++++++lr+l++s  + ++kt
  Sof006039 275 APTTLAApRDFWTLRYTSGLEDGSLVICERSLTQSTGGPSgpnTPNFVRAEVLPSGYLIRPCEGGGSMIHIVDHVDLDAWSVPEVLRPLYESPKILAQKT 374
                *****999****************************9999999********************************************************* PP

                HHHHTXXXX CS
      START 196 wvatlqrqc 204
                + a+l++ +
  Sof006039 375 TIAALRHIR 383
                ****99865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.4352286IPR001356Homeobox domain
SMARTSM003892.6E-152490IPR001356Homeobox domain
SuperFamilySSF466893.04E-172689IPR009057Homeodomain-like
CDDcd000868.82E-172787No hitNo description
PfamPF000462.3E-162885IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.608.9E-192982IPR009057Homeodomain-like
CDDcd146867.84E-779118No hitNo description
Gene3DG3DSA:1.20.5.1707.9E-483131No hitNo description
PROSITE profilePS5084826.956166366IPR002913START domain
CDDcd088752.67E-73170386No hitNo description
Gene3DG3DSA:3.30.530.205.2E-25174358IPR023393START-like domain
SMARTSM002348.2E-47175385IPR002913START domain
SuperFamilySSF559613.02E-39176386No hitNo description
PfamPF018524.6E-53176383IPR002913START domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 469 aa     Download sequence    Send to blast
MAMVVVGGGK DRSSPGGGGA PQVDTGKYVR YTPEQVEALE RVYSECPKPS SLRRQQLIRE  60
CPILSNIEPK QIKVWFQNRR CREKQRKEAS RLQTVNRKLT AMNKLLMEEN DRLQKQVSRL  120
VYENGYMRQQ LHNPSAATTD TSCESVVTSG QHHQQQNPAA PRPQRDANNP AGLLAIAEET  180
LAEFLSKATG TAVDWVQMVG MKPGPDSIGI IAVSHNCSGV AARACGLVSL EPTKVAEILK  240
DRPSWYRDCR CVDILHVIPT GNGGTIELIY MQTYAPTTLA APRDFWTLRY TSGLEDGSLV  300
ICERSLTQST GGPSGPNTPN FVRAEVLPSG YLIRPCEGGG SMIHIVDHVD LDAWSVPEVL  360
RPLYESPKIL AQKTTIAALR HIRQIAHESS GEMPYGGGRQ PAVLRTFSQR LSRGFNDAVN  420
GFPDDGWSLM SSDGAEDVTI AINSSPNNLW VLMSTLPAGY CDWKLHPVC
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.82151e-107bud| callus| crown| inflorescence| leaf| meristem| root| seed| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464180.10.0homeobox-leucine zipper protein HOX32
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLC5WR860.0C5WR86_SORBI; Uncharacterized protein
STRINGSb01g013710.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]