PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof006093
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family TALE
Protein Properties Length: 453aa    MW: 49288.6 Da    PI: 7.6819
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-36175PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox31.23.7e-102282651954
                HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
   Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                Fe   ++yp+  +++ LAk++gLt +qV++WF N R +
  Sof006093 228 FEHflHPYPTDGDKQMLAKQTGLTRNQVSNWFINARVR 265
                554459******************************88 PP
2BELL92.54.1e-3092161372
       BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                +e q kk++L+s++eeV+krY+ y++q+qtvi sFe+vag  +a+p++++Al+a+++hF+cLk +i +q+
  Sof006093  92 AEQQWKKTRLISMMEEVCKRYRLYYQQVQTVIHSFETVAGFSNAAPFAAMALRAMAKHFKCLKSMILSQL 161
                5899***************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.5E-3522159IPR006563POX domain
PfamPF075262.7E-3627157IPR006563POX domain
PROSITE profilePS5007112.228206269IPR001356Homeobox domain
SMARTSM003897.4E-11209273IPR001356Homeobox domain
CDDcd000861.15E-13209270No hitNo description
SuperFamilySSF466892.99E-17211277IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.1E-28212273IPR009057Homeodomain-like
PfamPF059204.4E-19226265IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
PPAPPQPRRA HAAPSAPFGP FTGYAAVLGR SRFLVPAEKL LEEICDVGGA ASHVDRSVSD  60
EGLLDADPME AIDHDMDGAD RAASDAGPIS GAEQQWKKTR LISMMEEVCK RYRLYYQQVQ  120
TVIHSFETVA GFSNAAPFAA MALRAMAKHF KCLKSMILSQ LRNTTKAAAG KEGLSKDIVM  180
FGLAGGSAAS LQRASSIAAF GHGQPHNIWR PQRGLPERAV SVLRAWLFEH FLHPYPTDGD  240
KQMLAKQTGL TRNQVSNWFI NARVRLWKPM VEEIHNLEMR QVHKHPVLDK GQHALHHQTQ  300
HSSESSGKPS DPSDSQLGQS SSITRNHNIP ASQGFADELS EMSHSIQQGQ VTFAYNGLST  360
PHHSLASSQH HQQAGPMSGI GGMGTGGVSL TLGLHQNNRV CMAEPLPASL PPNLAHRFGL  420
EEVSDPYMMG SFGNQDRHFG KEIGGHLVHD FVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A6e-17215272158Homeobox protein Meis1
4xrs_B6e-17215272158Homeobox protein Meis1
5bng_A7e-17215273159Homeobox protein Meis2
5bng_B7e-17215273159Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.28190.0crown| inflorescence| root| stem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002458762.10.0BEL1-like homeodomain protein 9
TrEMBLC5XPT00.0C5XPT0_SORBI; Uncharacterized protein
STRINGSb03g039840.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27990.14e-68BEL1-like homeodomain 8