PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof006159

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

GRAS

Protein Properties

Length: 433aa MW: 48922.7 Da PI: 9.6736

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-94044	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	247.8	4.3e-76	175	413	1	241
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100 l++ L++cA+av+++d + a++lL+++++++ p+gd qRla++f+ +L+arla+++s+ly+ l +++t+ s+ l+a++l+ ++P+ ++sh++ Nq Sof006159 175 LRTILIHCAQAVAADDRRTANELLKQIRHHSKPNGDGSQRLAHCFADGLEARLAGTGSQLYRMLIAKRTT---ASDMLKAYHLYLAACPFKRLSHFLSNQ 271 5789*********************************************************9999998...89********************* PP GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp 198 +Il ++++++vHiiDf+i G+QWp+L++ L++R++gpp lRiTg++ p++g +e++eetg+rLa++A++++vpf+++ +a+++e++++e+L+v + Sof006159 272 TILSMIKNASKVHIIDFGIYFGFQWPCLIRRLSKREGGPPVLRITGIDVPQPGfrPSERIEETGRRLAEYAAKFKVPFKYQG-IASKWETIRVEDLKVGK 370 ************************************************9*************************.7************ PP GRAS 199 gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvv 241 +E+++Vn+ ++ +l de+v+++s+r++vL+++++++P+++++ Sof006159 371 DEVVIVNCLYRFRNLIDETVAVDSPRNRVLNTIREVNPTIFIH 413 **************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	48.262	149	433	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.5E-73	175	413	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
XTRPLVGTST DASNAVDVLE DPLITNGQIP EYLFESLPTW DFRRGIEEAQ KFLPDSNTLV 60 IDLEAGGVAR PQEARKDVSL NAKKADVLKA KKNRQGEDLD LMEGRNFKQS AFCSDEPDWI 120 EMFDDLLRQT EKKATDLREL MRNEAYKNSQ VTQTKGPSGP RPRGRKPTKK DVVDLRTILI 180 HCAQAVAADD RRTANELLKQ IRHHSKPNGD GSQRLAHCFA DGLEARLAGT GSQLYRMLIA 240 KRTTASDMLK AYHLYLAACP FKRLSHFLSN QTILSMIKNA SKVHIIDFGI YFGFQWPCLI 300 RRLSKREGGP PVLRITGIDV PQPGFRPSER IEETGRRLAE YAAKFKVPFK YQGIASKWET 360 IRVEDLKVGK DEVVIVNCLY RFRNLIDETV AVDSPRNRVL NTIREVNPTI FIHGIVNGHT 420 VFPSSSHVSV RHC

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

XTRPLVGTST DASNAVDVLE DPLITNGQIP EYLFESLPTW DFRRGIEEAQ KFLPDSNTLV  60
IDLEAGGVAR PQEARKDVSL NAKKADVLKA KKNRQGEDLD LMEGRNFKQS AFCSDEPDWI  120
EMFDDLLRQT EKKATDLREL MRNEAYKNSQ VTQTKGPSGP RPRGRKPTKK DVVDLRTILI  180
HCAQAVAADD RRTANELLKQ IRHHSKPNGD GSQRLAHCFA DGLEARLAGT GSQLYRMLIA  240
KRTTASDMLK AYHLYLAACP FKRLSHFLSN QTILSMIKNA SKVHIIDFGI YFGFQWPCLI  300
RRLSKREGGP PVLRITGIDV PQPGFRPSER IEETGRRLAE YAAKFKVPFK YQGIASKWET  360
IRVEDLKVGK DEVVIVNCLY RFRNLIDETV AVDSPRNRVL NTIREVNPTI FIHGIVNGHT  420
VFPSSSHVSV RHC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	4e-33	159	379	1	220	Protein SCARECROW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.13556	0.0	bud\| callus\| inflorescence\| root\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, shoots, flowers and siliques. {ECO:0000269\|PubMed:10341448, ECO:0000269\|PubMed:18500650}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021302063.1	0.0	scarecrow-like protein 9
Refseq	XP_021302066.1	0.0	scarecrow-like protein 9
Refseq	XP_021302069.1	0.0	scarecrow-like protein 9
Swissprot	Q9XE58	1e-119	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A1Z5SAG3	0.0	A0A1Z5SAG3_SORBI; Uncharacterized protein
STRING	Sb01g039670.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-116	SCARECROW-like 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]