PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof006584
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family bZIP
Protein Properties Length: 378aa    MW: 40196.8 Da    PI: 7.6334
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-13425PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_169.45.6e-22244306163
                XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
     bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                e+elkre+rkq+NRe+ArrsR+RK+ae++eL++ v++L+aeN++L+ e+ +l++ ++kl+ e+
  Sof006584 244 ERELKREKRKQSNRESARRSRLRKQAETQELATQVESLTAENTSLRTEIGRLTESSEKLRLEN 306
                89*********************************************************9887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077776.6E-28192IPR012900G-box binding protein, multifunctional mosaic region
Gene3DG3DSA:1.20.5.1709.1E-18238303No hitNo description
SMARTSM003384.7E-23244308IPR004827Basic-leucine zipper domain
PfamPF001704.4E-20244306IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.185246309IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.25E-11247302No hitNo description
CDDcd147021.83E-21249297No hitNo description
PROSITE patternPS000360251266IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 378 aa     Download sequence    Send to blast
MAQDEAVAPQ KTGNTASPSK DYPTPCPYPD WSTMQAYYGP GVLPPTYFAP AIAPGHPPPY  60
MWGPQPIMPP PFGTPYAAVY PHGGAYPHPL VPMMSTPLSM EAAKSANSKE KTSNKKLKEI  120
DRTSVSAGSG NSKKNNASSE DYSAEDSSDV NDQKVNKTSR KRSSDDGPGA ETTTGANTEC  180
VLAPNHTLGN AAILPHHCFP APVIKPSPTN VANSRAIGTE ISPSPGVMVP AHTAVQSDLS  240
IKDERELKRE KRKQSNRESA RRSRLRKQAE TQELATQVES LTAENTSLRT EIGRLTESSE  300
KLRLENSALM VKLKDTAAPT PADKAATSSS SPCAAAENFL SMIDSAKAAG VSRHTEHGEP  360
NLRQLLDSSP AADVAAVS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1260266RRSRLRK
2260267RRSRLRKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.137760.0crown| inflorescence| leaf| meristem| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440282.10.0common plant regulatory factor 1 isoform X1
TrEMBLA0A059Q2740.0A0A059Q274_9POAL; G-box binding factor
STRINGSb09g028990.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46270.15e-46G-box binding factor 3