PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof006702

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

Nin-like

Protein Properties

Length: 369aa MW: 40190.2 Da PI: 7.9942

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-531133734	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.1	4.3e-29	67	117	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek isle+l++yFs+++k+AAk+Lgvc+T++KriCRq+GI+RWP+Rki+++ Sof006702 67 EKIISLEVLQQYFSGSLKNAAKSLGVCPTTMKRICRQHGISRWPSRKINKV 117 899**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.938	48	137	IPR003035	RWP-RK domain
Pfam	PF02042	1.9E-26	70	117	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.71E-10	312	368	No hit	No description
Pfam	PF00564	8.4E-6	317	367	IPR000270	PB1 domain
PROSITE profile	PS51745	12.004	317	369	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	5.2E-11	317	367	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
XNSRSKSLQN FTLTLANTPT TTKRSTRTTC NALAXAGRLE EAXCPVTKSR TIKQPLELPD 60 TRCGKAEKII SLEVLQQYFS GSLKNAAKSL GVCPTTMKRI CRQHGISRWP SRKINKVNRS 120 LSKLKQVIES VQGSDAAFNL TSITGPLPIP VGPSSESLNV EKLTQSKVAD LSNLAVDGDR 180 DSLQKSLEND DHFGIVMAQQ GFIDNNNDTQ LEADKASHSR SSSGEGSINS RTSEGSCQGS 240 PANQTFVCKP IASTFAEPQL NQEFNKEPLQ EPQLPLSRML IEDSGSSKDL KNLFTSTSDQ 300 PFLTPPNNLV SMKHSGTVTI KASFKEDIVR VPFPCSGGVI GLKEEVAERL KTDGGTFDIK 360 YLDDDHEVX

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

XNSRSKSLQN FTLTLANTPT TTKRSTRTTC NALAXAGRLE EAXCPVTKSR TIKQPLELPD  60
TRCGKAEKII SLEVLQQYFS GSLKNAAKSL GVCPTTMKRI CRQHGISRWP SRKINKVNRS  120
LSKLKQVIES VQGSDAAFNL TSITGPLPIP VGPSSESLNV EKLTQSKVAD LSNLAVDGDR  180
DSLQKSLEND DHFGIVMAQQ GFIDNNNDTQ LEADKASHSR SSSGEGSINS RTSEGSCQGS  240
PANQTFVCKP IASTFAEPQL NQEFNKEPLQ EPQLPLSRML IEDSGSSKDL KNLFTSTSDQ  300
PFLTPPNNLV SMKHSGTVTI KASFKEDIVR VPFPCSGGVI GLKEEVAERL KTDGGTFDIK  360
YLDDDHEVX

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.11620	1e-162	bud\| inflorescence\| leaf\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457049.1	0.0	protein NLP3
Swissprot	Q5NB82	1e-172	NLP3_ORYSJ; Protein NLP3
TrEMBL	C5XJJ3	0.0	C5XJJ3_SORBI; Uncharacterized protein
STRING	Sb03g000490.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G64530.1	2e-52	Nin-like family protein