PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof006754
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GRAS
Protein Properties Length: 364aa    MW: 41336.9 Da    PI: 8.8684
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-38923PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS243.86.9e-75673642299
       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqa 101
                ++lL++cA+ v+++d + a++lL++++++asp+gd  qRla++f+++L+arla+++s++yk++ +++ +    +++l+a++l+  ++P+ k+sh+ aNq+
  Sof006754  67 ETLLVHCAQSVATDDRRGATELLKQIRQHASPNGDGDQRLAHCFANGLEARLAGNGSQIYKSVIMTRFP---CTDVLKAYQLYLAACPFKKISHFFANQT 163
                789*************************************************************99999...9*************************** PP

       GRAS 102 IleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpg 199
                I++ave++++vHi+D++i +G+QWp+L+q L++R++gpp+lRiTg++ p++g   +e++eetg+ L+++A++++vpfef++ + +r+e++++e+L+++++
  Sof006754 164 IMNAVEKAKKVHIVDYGIYYGFQWPCLIQRLSTRRGGPPRLRITGIDTPHPGfrPAERIEETGRYLKDYAQTFNVPFEFRA-IPSRFEAVQIEDLHIEKD 262
                **************************************************99*****************************.7***************** PP

       GRAS 200 EalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflea.leyysalfdsleak.lpreseerikvErellgreivnv 297
                E l+Vn++++ ++l+desv   + +++ L+  ++ +P+ v   ++   +  + +   ++     + s++fd+le++ +  +++++  +E +l+gre++nv
  Sof006754 263 ELLIVNSMFKFKTLMDESVVAXESKEHGLEHNQDDEPTFVHSWDRKWLLKCTILRVSLSGRpYTTTSVFFDMLETNhFEGTTKQKLLIESALFGREASNV 362
                *********************999**********************999999999888865166678889***777255566****************** PP

       GRAS 298 va 299
                ++
  Sof006754 363 IS 364
                95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.68240364IPR005202Transcription factor GRAS
PfamPF035142.4E-7267364IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
XDHLVREMMD KVLLCNGEMC SKGVKELREA LQHDVAKNSH GVHGKGSGHG RGRGKKQPKK  60
KEVVNLETLL VHCAQSVATD DRRGATELLK QIRQHASPNG DGDQRLAHCF ANGLEARLAG  120
NGSQIYKSVI MTRFPCTDVL KAYQLYLAAC PFKKISHFFA NQTIMNAVEK AKKVHIVDYG  180
IYYGFQWPCL IQRLSTRRGG PPRLRITGID TPHPGFRPAE RIEETGRYLK DYAQTFNVPF  240
EFRAIPSRFE AVQIEDLHIE KDELLIVNSM FKFKTLMDES VVAXESKEHG LEHNQDDEPT  300
FVHSWDRKWL LKCTILRVSL SGRPYTTTSV FFDMLETNHF EGTTKQKLLI ESALFGREAS  360
NVIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-36702808218GRAS family transcription factor containing protein, expressed
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.89310.0callus| inflorescence| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in cotyledons, leaves and flowers, and in the elongation zone in root. {ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002456620.10.0scarecrow-like protein 9
SwissprotO809331e-93SCL9_ARATH; Scarecrow-like protein 9
TrEMBLC5XPP90.0C5XPP9_SORBI; Uncharacterized protein
STRINGSb03g039510.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37650.12e-94GRAS family protein