PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof006837
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family CPP
Protein Properties Length: 358aa    MW: 38604.9 Da    PI: 8.7633
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-23287PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR49.86.8e-1671111242
        TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 
                ++k+C+CkkskClk+YCeCfaag++Cse C+C +C N++++
  Sof006837  71 SCKRCSCKKSKCLKLYCECFAAGVYCSEPCSCIGCLNNQSH 111
                689**********************************9975 PP
2TCR52.87.7e-17156195140
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                ++k+gCnCkks ClkkYCeCf+ g+ Cs +C+Ce+CkN  
  Sof006837 156 RHKRGCNCKKSACLKKYCECFQGGVGCSISCRCEGCKNAF 195
                589***********************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011145.0E-1770111IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163435.85971196IPR005172CRC domain
PfamPF036385.7E-1273108IPR005172CRC domain
SMARTSM011146.8E-17156197IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.4E-12158194IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
XRLHALVRNS RATINELSNL IGLSGSSPAP SEQIITNDDF NQTTDVATAE ASSQGSPKKK  60
RQKFDNGDGT SCKRCSCKKS KCLKLYCECF AAGVYCSEPC SCIGCLNNQS HTETVLSTRQ  120
QIESRNPLAF APKVIHTSEP GLELGDFSNK TPASARHKRG CNCKKSACLK KYCECFQGGV  180
GCSISCRCEG CKNAFGKREG AAVLGIEEPK QVLEEKNVCV KEEKSEIDKQ LVIYQTTDAA  240
PAENVLTTPS MVECRPLACL PPPSSKKSSK KPRSSAKLTG HPSRLCNLQA PPKTDIVLSP  300
FENYAEMALG DSTSDILKGK SPXXTSVKVV SPNKKXNLSP TNGTRLSXIL LSGKKLDL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A4e-167319312120Protein lin-54 homolog
5fd3_B4e-167319312120Protein lin-54 homolog
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.74360.0inflorescence| root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at the late stage of pollen development in tricellular and mature pollen. {ECO:0000269|PubMed:18057042}.
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in all the aerial organs with highest expression in flowers. {ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002443515.10.0protein tesmin/TSO1-like CXC 2
SwissprotF4JIF55e-76TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBLC5YRH00.0C5YRH0_SORBI; Uncharacterized protein
STRINGSb08g020800.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.12e-61TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]