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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sof006903 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
| Family |
GRAS |
| Protein Properties |
Length: 354aa MW: 39680.5 Da PI: 5.6937 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PUT-157a-Saccharum_officinarum-94133725 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 390.8 | 1.5e-119 | 3 | 354 | 19 | 373 |
GRAS 19 laqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfd 118
+aq+++++l++ ++ +gdp qR+aay++e+Laa +++s++++y+al+++e++ + +l+a+++++e++P++++++++aN aIlea +gee vHiiDfd
Sof006903 3 EAQSIITELRQKVAIQGDPSQRIAAYLVEGLAAAIQSSGKGIYRALRCKEAP---TLYQLSAMQILFEICPCFRLGFMAANYAILEACKGEEVVHIIDFD 99
79*************************************************9...89999**************************************** PP
GRAS 119 isqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrllde 216
i+qG Q+++L+q L + +++p lRiTgv++pes+ l+ +g+rL+k+Ae ++vpfef++ va ++ed+++ +L+++pgEal+Vn+++ lh+l+de
Sof006903 100 INQGSQYITLIQFLRNHSNKPRLLRITGVDDPESVhrAVGGLKVVGQRLEKLAEDCEVPFEFRA-VAANTEDVTPGMLDCRPGEALIVNFAFLLHHLPDE 198
*********************************99888899***********************.799******************************** PP
GRAS 217 svsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316
svs+ ++rd++ +vk+l+Pk+v++veq+a++n+++Fl+rf e +yysalfdsl+a+lpres +r++vEr++l+reivn++aceg +r+er e ++kWr
Sof006903 199 SVSIVNQRDQTSPMVKGLQPKLVTLVEQDANTNTTPFLARFREVYDYYSALFDSLDATLPRESPDRMNVERQCLAREIVNILACEGPDRVERYEVAGKWR 298
**************************************************************************************************** PP
GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
+r+ +aGF p p+s+++ + +++ll+ + d yr e+ ++ l +gW d++Lv+ SaW
Sof006903 299 ARMAMAGFVPSPFSSSVIDGIRSLLKAYC-DKYRFEKVHDGLHFGWGDKTLVFSSAW 354
****************************9.55************************* PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 354 aa
Download sequence Send
to blast |
IDEAQSIITE LRQKVAIQGD PSQRIAAYLV EGLAAAIQSS GKGIYRALRC KEAPTLYQLS 60
AMQILFEICP CFRLGFMAAN YAILEACKGE EVVHIIDFDI NQGSQYITLI QFLRNHSNKP 120
RLLRITGVDD PESVHRAVGG LKVVGQRLEK LAEDCEVPFE FRAVAANTED VTPGMLDCRP 180
GEALIVNFAF LLHHLPDESV SIVNQRDQTS PMVKGLQPKL VTLVEQDANT NTTPFLARFR 240
EVYDYYSALF DSLDATLPRE SPDRMNVERQ CLAREIVNIL ACEGPDRVER YEVAGKWRAR 300
MAMAGFVPSP FSSSVIDGIR SLLKAYCDKY RFEKVHDGLH FGWGDKTLVF SSAW
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| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Sof.18001 | 0.0 | callus| crown| leaf| meristem| root| seed| stem |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, shoots, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}. |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
