PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof006977
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family GeBP
Protein Properties Length: 349aa    MW: 38370.9 Da    PI: 9.8429
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-10629PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57334.65.1e-1131115797
     DUF573   7 wseeDeivlLqGlidfkaktgkspsddidafyefvkksi.sfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                w ++De+ +L +l    +++g  p+ d   +   v++++   + + +++ eK+rrLK++++k v+       ++ ske++ ++++ls+kiWg
  Sof006977  31 WGKDDEMKILEALAAHVKSEGELPKTD--LLLASVRDRLvRKNCTYTDIYEKVRRLKERYEKAVSM-----GIVPSKEDELQMYNLSEKIWG 115
                9***************99999776665..57777777651677899******************99.....6677888899**********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.2E-1531115IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
XKGKKGWDKL EKPAALDPSL SVSKSEKPVR WGKDDEMKIL EALAAHVKSE GELPKTDLLL  60
ASVRDRLVRK NCTYTDIYEK VRRLKERYEK AVSMGIVPSK EDELQMYNLS EKIWGEKARE  120
AAAAVTSQKG GSVTKGKKGQ ANKEKMDGNA KGGAAKETAP STANQSGDSH QKGSKKGQAR  180
LSEEATTTAS PSKSKKQESH NEELNKVGGN LAKGNKGKTD KGNMDRDTDS LTPKETINAN  240
QNGGILIGVR KEKIHDDXNQ KEDANVLGVR RGFDELQKLY SNLAVYVEEI ESHHPCGETL  300
KRAFLSIADE KAEGLESKIK KLRVAETKAE VRQGDIKKEV LNLLLTLVD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.36711e-162inflorescence| meristem
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001141520.10.0Tyrosine specific protein phosphatase-like
TrEMBLB4FWP80.0B4FWP8_MAIZE; Tyrosine specific protein phosphatase-like
TrEMBLK4JFK60.0K4JFK6_MAIZE; GeBP-type transcription factor (Fragment)
STRINGSb04g011230.10.0(Sorghum bicolor)