PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof007103

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

ERF

Protein Properties

Length: 342aa MW: 37595.4 Da PI: 4.7874

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-67795	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	59.1	1.1e-18	104	153	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++G+r+++ +g+W+AeIrdp++ r++lg+f ++eeAa+a++a +++++g Sof007103 104 QFRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTFNSPEEAARAYDAEARRIRG 153 69*****.******954...4**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	1.11E-21	104	163	IPR016177	DNA-binding domain
CDD	cd00018	1.87E-31	104	162	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.1E-30	104	162	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.644	104	161	IPR001471	AP2/ERF domain
SMART	SM00380	1.3E-34	104	167	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.5E-10	105	116	IPR001471	AP2/ERF domain
Pfam	PF00847	2.0E-11	105	153	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.5E-10	127	143	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
TPTTKGPHHT KASQSGATLN EDRSGQAGRQ SRQDDGPSTR TRRIFEADFE VFEVESGESE 60 LESDDEANPF DAPTSGVARY GLNTSPAGVD GPAANSVKRK RKNQFRGIRR RPWGKWAAEI 120 RDPRKGVRVW LGTFNSPEEA ARAYDAEARR IRGKKAKVNF PDEFSTISQK HRAGPTSLKV 180 PEMDVEEKPI IKMANSNAYH YPVVGHNMPE PFMHTQNMSF APLVNSAAPV QEPFVNLSSD 240 QGSNSFSCSD FSLENDTRTP DITSVVVGES AFAQNADHAV VPPVMGNASV DLTELEPYMN 300 FLMDSGSEDS IDTLFSCDGS QDVVSNMDLW SFDDMPMSAG FY

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

TPTTKGPHHT KASQSGATLN EDRSGQAGRQ SRQDDGPSTR TRRIFEADFE VFEVESGESE  60
LESDDEANPF DAPTSGVARY GLNTSPAGVD GPAANSVKRK RKNQFRGIRR RPWGKWAAEI  120
RDPRKGVRVW LGTFNSPEEA ARAYDAEARR IRGKKAKVNF PDEFSTISQK HRAGPTSLKV  180
PEMDVEEKPI IKMANSNAYH YPVVGHNMPE PFMHTQNMSF APLVNSAAPV QEPFVNLSSD  240
QGSNSFSCSD FSLENDTRTP DITSVVVGES AFAQNADHAV VPPVMGNASV DLTELEPYMN  300
FLMDSGSEDS IDTLFSCDGS QDVVSNMDLW SFDDMPMSAG FY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	1e-20	103	168	13	79	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	97	111	KRKRKNQFRGIRRRP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.1227	0.0	bud\| callus\| crown\| inflorescence\| leaf\| meristem\| root\| seed\| stem

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269\|PubMed:12913152}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002436631.1	1e-179	ethylene-responsive transcription factor 1
Swissprot	Q6K7E6	1e-113	ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBL	C5Z5Y3	1e-177	C5Z5Y3_SORBI; Uncharacterized protein
STRING	Sb10g006260.1	1e-178	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53910.3	3e-37	related to AP2 12

Publications ? help Back to Top
Kim CY, et al. Identification of rice blast fungal elicitor-responsive genes by differential display analysis. Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4 [PMID:10755311] Koo SC, et al. OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33. Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70 [PMID:19607808] Iwamoto M,Takano M Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice. Biotechnol. Lett., 2011. 33(1): p. 173-8 [PMID:20872166] Serra TS, et al. OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors. Plant Mol. Biol., 2013. 82(4-5): p. 439-55 [PMID:23703395] Jisha V, et al. Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice. PLoS ONE, 2015. 10(6): p. e0127831 [PMID:26035591] Lourenço TF, et al. The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors. Plant Physiol., 2015. 169(3): p. 2275-87 [PMID:26381316]