PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof007178
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family ERF
Protein Properties Length: 338aa    MW: 36796.6 Da    PI: 5.9348
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-97860PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-18109158255
        AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                +++G+r+++ +g+W+AeIrdp     + +r++lg+f tae+Aa+a++  +++l+g
  Sof007178 109 HFRGIRQRP-WGKWAAEIRDPH----KgTRVWLGTFNTAEDAARAYDVEARRLRG 158
                69*******.**********72....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.9E-32108166IPR001471AP2/ERF domain
PfamPF008473.4E-11109158IPR001471AP2/ERF domain
SMARTSM003801.2E-35109172IPR001471AP2/ERF domain
PROSITE profilePS5103223.42109166IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-21109167IPR016177DNA-binding domain
CDDcd000184.64E-29109168No hitNo description
PRINTSPR003672.9E-11110121IPR001471AP2/ERF domain
PRINTSPR003672.9E-11132148IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MCGGAILAEL IPPTRRVASK PVTEGHLWPA SSKKAGIGSG SNKRHRHEYA DDDFEAAFEE  60
FDDDFDAHED DEDHPDHFVF SSKSAFSPAH DGRGARAAAT QRTKRGHRHF RGIRQRPWGK  120
WAAEIRDPHK GTRVWLGTFN TAEDAARAYD VEARRLRGSK AKVNFPAAGA RARRGKGNPR  180
TAPKPQQHHA AAAQALPALL LRGEKGQEGV AVKPETMDTF DVGSFFDMTF PTFPAVLPPA  240
MESSFAGSSA TSETWSPAKK LRYDDGDLSE GSGGGSALEL ADELSFDPFM LLQMPYSGGY  300
DSLDGPFAAE AVQQDVNNDM NGVSLWSFDE FPVDGSVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A5e-22108166463ATERF1
3gcc_A5e-22108166463ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.190280.0crown| root
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313148.10.0ethylene-responsive transcription factor 1-like
TrEMBLA0A1B6QQ350.0A0A1B6QQ35_SORBI; Uncharacterized protein
STRINGSb01g045060.20.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72360.11e-28ERF family protein