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Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sof007237 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
|
| Family |
GRAS |
| Protein Properties |
Length: 334aa MW: 36785.7 Da PI: 9.1338 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| PUT-157a-Saccharum_officinarum-614133729 | PU_ref | plantGDB | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 291.9 | 1.7e-89 | 2 | 266 | 50 | 326 |
GRAS 50 aarlarsvselykalppsetsekn.sseelaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvg 148
+ar+++ +ly+ lpp + + + +++aa+++f+ +sP++kfsh+taNqaI +a+e++ervHiiD+di+qGlQWp L++ LasRp+gpp++R+Tg+g
Sof007237 2 SARIVSXLIGLYAPLPPGTPAAAClHGRVAAAFQVFNGISPFVKFSHFTANQAIQKAFERKERVHIIDLDIMQGLQWPGLFHILASRPGGPPRVRLTGLG 101
78999999999999988777765558889999******************************************************************** PP
GRAS 149 spesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248
+ s ++le+tg+rL++fA++lg+pfef + va++ ++++e+L v ++Ea+aV++ + h+l+d ++s ++ +L+l+++l Pkvv++veq+++h
Sof007237 102 A----SMDALEATGKRLSDFADTLGLPFEFCA-VAEKAGNVDPEKLGVTRREAVAVHWLH--HSLYDVTGSDSN----TLWLIQRLAPKVVTMVEQDLSH 190
*....***************************.7*************************9..999999999999....********************** PP
GRAS 249 nsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326
s+sFl+rf+ea++yysalfdsl+a+++++s er++vE++ll+rei+nv+a g +r+ + + +++Wr++l ++GF++
Sof007237 191 -SGSFLARFVEAIHYYSALFDSLDASYGEDSPERHVVEQQLLSREIRNVLAVXGPARTGDVK-FGSWRKKLAQFGFRA 266
.899****************************************************999987.*************85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 334 aa
Download sequence Send
to blast |
MSARIVSXLI GLYAPLPPGT PAAACLHGRV AAAFQVFNGI SPFVKFSHFT ANQAIQKAFE 60
RKERVHIIDL DIMQGLQWPG LFHILASRPG GPPRVRLTGL GASMDALEAT GKRLSDFADT 120
LGLPFEFCAV AEKAGNVDPE KLGVTRREAV AVHWLHHSLY DVTGSDSNTL WLIQRLAPKV 180
VTMVEQDLSH SGSFLARFVE AIHYYSALFD SLDASYGEDS PERHVVEQQL LSREIRNVLA 240
VXGPARTGDV KFGSWRKKLA QFGFRAPLFA GRPGGQGACC WEWSPPTGTP WGRKTGASPW 300
GKGIWLVSEL EWGPHPKPPW PLLKVGYHTY DFKT
|
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Sof.3618 | 2e-65 | bud| callus| crown| inflorescence| meristem| stem |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed in early stages of lateral root primordium formation, becoming restricted to the endodermal cell lineage at later stages. {ECO:0000269|PubMed:10948251}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in the root endodermis and in a single file of cells through the quiescent center. {ECO:0000269|PubMed:10948251}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor involved in establishing and maintaining the correct radial pattern in the root apical meristem. {ECO:0000269|PubMed:10948251}. |
