PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof007333

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

C3H

Protein Properties

Length: 329aa MW: 35770.9 Da PI: 8.6174

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-4957	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	40	6.4e-13	6	30	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G++CkF+H++ Sof007333 6 EKECSYYMKTGHCKFGATCKFHHPE 30 689********************96 PP
2	zf-CCCH	38.5	2e-12	158	184	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C ++++tGtCkyG+ Ck++H++ Sof007333 158 PGQPECEHYMKTGTCKYGAVCKYHHPQ 184 5789*********************97 PP
3	zf-CCCH	26.1	1.4e-08	206	230	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +C ++a G+Ck+G++CkF H++ Sof007333 206 SQPCAYYAHHGFCKFGPTCKFDHPM 230 679********************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	8.8E-6	3	30	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.267	3	31	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.01E-6	6	30	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.9E-10	6	30	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	8.0E-5	9	29	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.2E-6	157	184	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.723	157	185	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.6E-9	159	184	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	2.62E-5	161	184	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.8E-4	163	182	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.568	203	231	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	5.9E-5	203	230	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	3.5E-6	205	230	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.31E-5	205	231	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
PLRLGEKECS YYMKTGHCKF GATCKFHHPE LGFLTETPGM YPPVQPSPIF SSHPYPHLAN 60 WQMGRPPVVP GSFLPGSYPP MMLPPTVMPM QGWNPYVSPM NQVTPAGGQQ AVPAAASYGL 120 SHQGPTSAVT YGSHYAQLYS STGTSSSNIQ EYAFPERPGQ PECEHYMKTG TCKYGAVCKY 180 HHPQYFSGPK SNCILSSLGL PLRPGSQPCA YYAHHGFCKF GPTCKFDHPM GTPNYSISAS 240 SLTDVPVAPY PHSFPVTPMP PYLPSSDLRP QYTLVKDSSA NPPAPGTTYG PVGSISKVYA 300 PHTLIRSPGF CSCWHASIIM RHSLRALVP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.4748	1e-157	bud\| callus\| inflorescence\| meristem\| seed\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002457592.1	0.0	zinc finger CCCH domain-containing protein 5
Swissprot	Q5NAV3	1e-154	C3H5_ORYSJ; Zinc finger CCCH domain-containing protein 5
TrEMBL	A0A059Q0L5	0.0	A0A059Q0L5_9POAL; Zinc finger CCCH type domain-containing protein
STRING	Sb03g009920.1	0.0	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.3	1e-55	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]