PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof007377
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family HSF
Protein Properties Length: 327aa    MW: 36997 Da    PI: 5.0363
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-130233PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.27.2e-35261172102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d +++ ++sws+++nsfvv+d++ f + +Lp+yFkh+nf+SFvRQLn+YgF+kv+ ++         weF++++F +g+++ll++i+
     Sof007377  26 FLTKTYDMVDDTTTDAVVSWSATNNSFVVWDPHIFGTVLLPRYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEEFLRGQRHLLKNIR 113
                   9********************999*****************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     Sof007377 114 RRKP 117
                   *985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3822115IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.9E-6122115IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.58E-3522115IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.8E-202649IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-3126115IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-206476IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406589IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.8E-207789IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 327 aa     Download sequence    Send to blast
XWPSVVAANG QPRPMDVLHD GGPPPFLTKT YDMVDDTTTD AVVSWSATNN SFVVWDPHIF  60
GTVLLPRYFK HNNFSSFVRQ LNTYGFRKVD PDRWEFANEE FLRGQRHLLK NIRRRKPPHS  120
SPNQQSLGSY LEVGHFGYEE EIDQLKRDKQ LLMAEVVKLR QEQQNTKSDL QAMEEKLQDT  180
EQKQQQMMAF MARVMQNPEF MQQLISQREM RKGLEDAISK KRRRHIDQGP EADSMGTGSS  240
LEQGSQAVFL PLEPIESLAN GVPSDLESSS VEAKGFEVQQ GVSSGGSERL NGRPSAELND  300
DFWEDLLHEG GLGADAGNAV GHDDMKM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B5e-262411527129Heat shock factor protein 1
5d5v_B5e-262411527129Heat shock factor protein 1
5d5v_D5e-262411527129Heat shock factor protein 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sof.186021e-133inflorescence| leaf| meristem| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator expressed upon environmental stress that specifically binds DNA of heat shock promoter elements (HSE). Involved in heat stress response. {ECO:0000269|PubMed:18064488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466300.10.0heat stress transcription factor A-2e
SwissprotQ6F3880.0HFA2E_ORYSJ; Heat stress transcription factor A-2e
TrEMBLC5WX780.0C5WX78_SORBI; Uncharacterized protein
STRINGSb01g005250.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.17e-96heat shock transcription factor A6B
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]