PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sof007455
Organism
Saccharum officinarum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex
Family CPP
Protein Properties Length: 323aa    MW: 35071.2 Da    PI: 8.12
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-157a-Saccharum_officinarum-121946PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR51.81.6e-165088240
        TCR  2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40
                +k+C+CkkskClk+YCeCfaag++Cse C+C++C Nk 
  Sof007455 50 ACKRCSCKKSKCLKLYCECFAAGVYCSEPCSCQGCLNKP 88
               589**********************************96 PP
2TCR51.12.6e-16135174140
        TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                ++k+gCnCkks+ClkkYCeC++ g+ Cs +C+Ce+CkN+ 
  Sof007455 135 RHKRGCNCKKSSCLKKYCECYQGGVGCSTNCRCESCKNTF 174
                589***********************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011143.8E-174990IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.91150175IPR005172CRC domain
PfamPF036382.9E-125287IPR005172CRC domain
SMARTSM011145.1E-16135176IPR033467Tesmin/TSO1-like CXC domain
PfamPF036385.5E-12137173IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
XFTPSGGELL EFPMDDCSAG GFPVSDHVSG QSVSPQKKRR KTDNGDDGEA CKRCSCKKSK  60
CLKLYCECFA AGVYCSEPCS CQGCLNKPIH EEIVLSTRKQ IEFRNPLAFA PKVIRMSDAG  120
LETGEDPNNT PASARHKRGC NCKKSSCLKK YCECYQGGVG CSTNCRCESC KNTFGRRDAE  180
TELTEEMKQE SEQTENCPQE KENGQQKANV QSEDHPLLDL VPITPPFDLS SSLLKLPNFS  240
SAKPPRPSKP RSANSRSSAS KATTTVQSCK SSKIAVSGID EEMPDILKEP NSPNNCVKTT  300
SPNGKRVSPP HNGLSISPNR KGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-155417214120Protein lin-54 homolog
5fd3_B2e-155417214120Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13640KKRRK
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at the late stage of pollen development in tricellular and mature pollen. {ECO:0000269|PubMed:18057042}.
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in all the aerial organs with highest expression in flowers. {ECO:0000269|PubMed:10769245, ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459413.10.0protein tesmin/TSO1-like CXC 3
SwissprotF4JIF52e-86TCX2_ARATH; Protein tesmin/TSO1-like CXC 2
TrEMBLA0A1W0W2A90.0A0A1W0W2A9_SORBI; Uncharacterized protein
STRINGSb02g004250.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G14770.18e-69TESMIN/TSO1-like CXC 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]