PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof007462

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

HB-other

Protein Properties

Length: 323aa MW: 35500 Da PI: 6.5129

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-16703	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.8	2.1e-09	24	67	9	52
HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 9 keqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 + +e+L ++F++n p ++ +e L+++lg++ +++ WF+N R Sof007462 24 PAAVEVLRKAFAENELPPRDVKENLSRELGISFEKIDKWFKNTR 67 67899*************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.8E-11	9	67	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.12E-10	9	72	IPR009057	Homeodomain-like
SMART	SM00389	7.1E-9	13	77	IPR001356	Homeobox domain
PROSITE profile	PS50071	11.92	13	73	IPR001356	Homeobox domain
CDD	cd00086	1.45E-9	17	68	No hit	No description
Pfam	PF00046	5.6E-7	24	67	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
XDFSNVISEE KSQKKGRKLF RIPPAAVEVL RKAFAENELP PRDVKENLSR ELGISFEKID 60 KWFKNTRCAA LRDARLKGTV IIRLPAKAQE IKEKLESQAE RNGHVTGPCN NSRTNEEKLL 120 TLAPNAQGEK NGIAADYVLQ KSGISGKVDS VDNSCLVPLS ESINVHTRLQ QNLEMRKMES 180 TSSPVWLHNK GGCLFPTGQA KESTLPTGKP CLQSEISHPT TNEVSTLVQA TSWMDAGACA 240 EVQEATPWVD TGASDYQPFL DVIDEMCGLE CRLQRLKENM LSSGIDGKTT GESDMGNQAV 300 VLVPTAELKE KAPHGSFFGH YCP

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.5614	0.0	bud\| crown\| inflorescence\| leaf\| meristem\| root\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002451539.2	1e-177	pathogenesis-related homeodomain protein isoform X1
Refseq	XP_021314976.1	1e-177	pathogenesis-related homeodomain protein isoform X2
TrEMBL	C5XUM8	1e-175	C5XUM8_SORBI; Uncharacterized protein
STRING	Sb04g003450.1	1e-176	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	1e-15	pathogenesis related homeodomain protein A