PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof007473

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

C2H2

Protein Properties

Length: 323aa MW: 36502.2 Da PI: 6.8784

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-80820	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.1	0.00029	44	67	2	23
EETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt..H 23 +C+dCgk+++++ + H ++ H Sof007473 44 VCSDCGKPCRSQTEVDLHTKRtgH 67 8***************99998666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	8	30	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	45	67	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:1.10.8.10	1.2E-10	93	159	No hit	No description
SuperFamily	SSF46934	4.15E-16	103	168	IPR009060	UBA-like
PROSITE profile	PS50030	11.101	114	155	IPR015940	Ubiquitin-associated domain
Pfam	PF00627	4.2E-6	116	152	IPR015940	Ubiquitin-associated domain
SMART	SM00165	6.0E-4	116	154	IPR015940	Ubiquitin-associated domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MAGLSLRCGD CGAQLRSVEE AQAHAEATNH ANFVESTEAV LNLVCSDCGK PCRSQTEVDL 60 HTKRTGHTEF ADKTAEAAKP IDLEAPLKPA SEDAMDVDAS ASASGEPQEM VVPEVNKEML 120 TDLEGMGFST ARATRALHFS GNSTIEGAIN WLSEHQEDAD IDEMPLVPAN SKTEANKPSL 180 TPEEMKIKAQ ELRERARKKK EEEERRMERK REKERIRIGK ELLEAKRIEE QNERKRMIEL 240 RRLEKEEEKR AREKIRQKLE EDKAERRRKL GLPPEDPAAA KPSAPPPVEE KKSALPVRPA 300 TKAERMRDCL KXLKHRTRMM IPK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Sof.10890	1e-178	bud\| crown\| inflorescence\| leaf\| meristem\| root\| seed\| stem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001142194.1	0.0	uncharacterized protein LOC100274362
TrEMBL	A0A1D6Q270	0.0	A0A1D6Q270_MAIZE; Ubiquitin-associated (UBA)/TS-N domain-containing protein
STRING	GRMZM2G028766_P01	0.0	(Zea mays)