PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sof007550

Organism

Saccharum officinarum

Taxonomic ID

4547

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Saccharinae; Saccharum; Saccharum officinarum complex

Family

VOZ

Protein Properties

Length: 319aa MW: 35611.5 Da PI: 5.0742

Description

VOZ family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-157a-Saccharum_officinarum-27514	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	VOZ	300.4	1.6e-92	83	299	1	216
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalne.glpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaatakspwnaaelfdls 99 p+ps++lgpkcalwdc rp+ g+e+ dyc+ +ha laln+ gl+gt+pv+rpkgidlkdg+lfa l ak++ k vg+p+c aat+kspwna+elfdls Sof007550 83 PSPSQYLGPKCALWDCGRPVGGTEDSGDYCNPYHAGLALNDdGLLGTRPVMRPKGIDLKDGPLFADLIAKAKEKIVGVPVCGSAATSKSPWNAPELFDLS 182 89************************************9799**************************************************** PP VOZ 100 llegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeineldalalyrlelklvdekksakgk 199 llege++rewlffd+p++afesg + qrs+ +y+ rgwhesrk vmk f+ lkr yymdp +++ h+ eyein +dal + +++ +k ++k Sof007550 183 LLEGESLREWLFFDTPKKAFESGHQEQRSFANYRERGWHESRKXVMKVFASLKRVYYMDPTTLKKPGGHFIEYEINVFDALGIDPAGVQVFXLQKEGQAK 282 ************************************************************************************************ PP VOZ 200 vskdsladlqkklgrlt 216 +++++l+++q+klgr+t Sof007550 283 LANSPLNEIQRKLGRVT 299 *************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MYYIDHEISI DDFLCDDDYK INISGSNEDQ FNNLHGIGQL EHQQFDLPLD LPPTHSYADA 60 NSSEQNIGDV FVHMSDLLTT IWPSPSQYLG PKCALWDCGR PVGGTEDSGD YCNPYHAGLA 120 LNDDGLLGTR PVMRPKGIDL KDGPLFADLI AKAKEKIVGV PVCGSAATSK SPWNAPELFD 180 LSLLEGESLR EWLFFDTPKK AFESGHQEQR SFANYRERGW HESRKXVMKV FASLKRVYYM 240 DPTTLKKPGG HFIEYEINVF DALGIDPAGV QVFXLQKEGQ AKLANSPLNE IQRKLGRVTG 300 NSPVKQTGCW NQPKGYTQG

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Ubiquitous. Expressed in the vascular bundles of various tissues, specifically in the phloem. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269\|PubMed:15295067, ECO:0000269\|PubMed:22904146}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By far-red light. {ECO:0000269\|PubMed:22904146}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002440076.1	1e-173	transcription factor VOZ1
Swissprot	Q9SGQ0	2e-84	VOZ1_ARATH; Transcription factor VOZ1
TrEMBL	C5Z0Y9	1e-172	C5Z0Y9_SORBI; Uncharacterized protein
STRING	Sb09g025580.1	1e-172	(Sorghum bicolor)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G28520.2	4e-81	vascular plant one zinc finger protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Yasui Y,Kohchi T VASCULAR PLANT ONE-ZINC FINGER1 and VOZ2 repress the FLOWERING LOCUS C clade members to control flowering time in Arabidopsis. Biosci. Biotechnol. Biochem., 2014. 78(11): p. 1850-5 [PMID:25351333] Kumar S,Choudhary P,Gupta M,Nath U VASCULAR PLANT ONE-ZINC FINGER1 (VOZ1) and VOZ2 Interact with CONSTANS and Promote Photoperiodic Flowering Transition. Plant Physiol., 2018. 176(4): p. 2917-2930 [PMID:29507119] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]